PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G332400.1

Common Name

B456_007G332400, LOC105761350

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

STAT

Protein Properties

Length: 709aa MW: 79641.1 Da PI: 5.2969

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G332400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	179.2	5.8e-56	222	343	1	122
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipk 91 ldv+lln++gqpv+k++evvasLlya + l+vek++d+e+pLL+s+dG+ef+s drp+kl +Grasfklkis+Lsskcdnr f+ikf + k Gorai.007G332400.1 222 LDVLLLNTFGQPVNKELEVVASLLYAHNWLPVEKTNDEEPPLLASCDGIEFASCDRPCKLSKGRASFKLKISKLSSKCDNRQFCIKFGVSK 312 89*************************************************************************************** PP STAT 92 lkkypfleavskpirCisrsrntrsssltkk 122 l+ y+fle +s +irCisr+r+ r+s+ ++k Gorai.007G332400.1 313 LEGYRFLEDFSPSIRCISRNRTPRTSTIVWK 343 ***********************999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.60.120.200	4.0E-6	5	177	IPR013320	Concanavalin A-like lectin/glucanase domain
SuperFamily	SSF49899	1.85E-6	9	171	IPR013320	Concanavalin A-like lectin/glucanase domain
Pfam	PF13385	1.6E-6	9	177	No hit	No description
CDD	cd10338	2.31E-55	597	708	No hit	No description
Gene3D	G3DSA:3.30.505.10	7.0E-7	600	682	IPR000980	SH2 domain
SuperFamily	SSF55550	2.67E-8	604	667	IPR000980	SH2 domain
PROSITE profile	PS50001	10.093	608	708	IPR000980	SH2 domain

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence Send to blast
MGENNQIIGE DDYILLKDFK VETEVDEEKG FILCFWVYIF NSNAFPSTIL KQVYAETNSS 60 PPLLVLDEKT LMIFPLTCLL NEALGSGNTD LPSEVPKVSA EIEHPQNNWI HVGYEVSSDF 120 VRLYINGEIA GELHLSSLSN DNSMPNGSRK RTLIGITGDS NLQGFIHDAK VLLSTLSIKE 180 QYVKDPPLRL SIDESSISDI EEDNGFWNIV GGKASCRRIF SLDVLLLNTF GQPVNKELEV 240 VASLLYAHNW LPVEKTNDEE PPLLASCDGI EFASCDRPCK LSKGRASFKL KISKLSSKCD 300 NRQFCIKFGV SKLEGYRFLE DFSPSIRCIS RNRTPRTSTI VWKKISAVHP VNGSQPFGLD 360 DSSCEPKHNI VHEAKLSPTS KRVRLGEAKI SAVDQHSEEC NSLASKQNQV ENGFGSRLEA 420 RPENFEEMNT SLSDSESTGA RDSALKSVSS RGHSVPDVTI FRYCLGGLTD RSLLLKEIAT 480 TVSDEEISGF AEQVSLYSGC SHHRHQIKMA KRLIDEGTVA WNLISQNNIQ VQWESAVFEI 540 EEQFMKIASC SSRSLTQQDF ELLRKIAGCQ EYMAQENFEK MWCWLYPVAY TLSSDWVNEM 600 WNSTSPKWIE GFITKEEAEL SLQGSRGLQE PGTFILRFPT SRSWPHPDAG SLVVTYVGTD 660 YCLHHKLLSI DNVYSSGVRE KNVKVKPLQD MLLEEPELSR LGRIMRRH*

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence Send to blast

MGENNQIIGE DDYILLKDFK VETEVDEEKG FILCFWVYIF NSNAFPSTIL KQVYAETNSS  60
PPLLVLDEKT LMIFPLTCLL NEALGSGNTD LPSEVPKVSA EIEHPQNNWI HVGYEVSSDF  120
VRLYINGEIA GELHLSSLSN DNSMPNGSRK RTLIGITGDS NLQGFIHDAK VLLSTLSIKE  180
QYVKDPPLRL SIDESSISDI EEDNGFWNIV GGKASCRRIF SLDVLLLNTF GQPVNKELEV  240
VASLLYAHNW LPVEKTNDEE PPLLASCDGI EFASCDRPCK LSKGRASFKL KISKLSSKCD  300
NRQFCIKFGV SKLEGYRFLE DFSPSIRCIS RNRTPRTSTI VWKKISAVHP VNGSQPFGLD  360
DSSCEPKHNI VHEAKLSPTS KRVRLGEAKI SAVDQHSEEC NSLASKQNQV ENGFGSRLEA  420
RPENFEEMNT SLSDSESTGA RDSALKSVSS RGHSVPDVTI FRYCLGGLTD RSLLLKEIAT  480
TVSDEEISGF AEQVSLYSGC SHHRHQIKMA KRLIDEGTVA WNLISQNNIQ VQWESAVFEI  540
EEQFMKIASC SSRSLTQQDF ELLRKIAGCQ EYMAQENFEK MWCWLYPVAY TLSSDWVNEM  600
WNSTSPKWIE GFITKEEAEL SLQGSRGLQE PGTFILRFPT SRSWPHPDAG SLVVTYVGTD  660
YCLHHKLLSI DNVYSSGVRE KNVKVKPLQD MLLEEPELSR LGRIMRRH*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269\|PubMed:15073273}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012434593.1	0.0	PREDICTED: uncharacterized protein LOC105761350 isoform X1
Swissprot	Q56XZ1	0.0	SHB_ARATH; SH2 domain-containing protein B
TrEMBL	A0A0D2R3E9	0.0	A0A0D2R3E9_GOSRA; Uncharacterized protein
STRING	Gorai.007G332400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5205	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.1	0.0	SH2 domain protein B

Link Out ? help Back to Top
Phytozome	Gorai.007G332400.1
Entrez Gene	105761350

Publications ? help Back to Top
Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG A new family of transcription factors. Development, 2008. 135(18): p. 3093-101 [PMID:18701541] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]