PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G327000.1
Common NameB456_007G327000, LOC105761312
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BES1
Protein Properties Length: 318aa    MW: 34075 Da    PI: 8.2219
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G327000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822201.13.4e-6221191118
              DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 
                         ++++r+ptwkErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kple+++++g sa+asp+
  Gorai.007G327000.1   2 TSGTRMPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPLERMDIVGGSATASPS 92 
                         5899*************************************************************************************** PP

              DUF822  92 sslqsslkssalaspvesysaspksss 118
                         ss++ s+ ss+++s ++s+  + ++ +
  Gorai.007G327000.1  93 SSYHPSPMSSSFPSSASSSYVVNSNGD 119
                         **9988888888777766555444333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.4E-563131IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTSGTRMPTW KERENNKRRE RRRRAIAAKI FAGLRMYGNY KLPKHCDNNE VLKALCNEAG  60
WTVEPDGTTY RKGCKPLERM DIVGGSATAS PSSSYHPSPM SSSFPSSASS SYVVNSNGDG  120
SSLIPWLKNL SSASSSPMSS KLPHIYIHSG SISAPVTPPL SSPTARTPRT NTDWEDLTAR  180
PGWSAQQHSF LPSSTPPSPG RQIVPDPEWF AGLRIPLSGP TSPTFSLVSS NPFGFKEEVL  240
AGGGSRMWTP GQSGTCSPAI AAGSDHTADV PMSEVISDEF AFGSNATGLV KPWEGERIHE  300
DCGSDDLELT LGSSRTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A9e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B9e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C9e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D9e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434546.10.0PREDICTED: BES1/BZR1 homolog protein 4-like
SwissprotQ9ZV881e-135BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A0D2SUL40.0A0A0D2SUL4_GOSRA; Uncharacterized protein
STRINGGorai.007G327000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19172781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-119BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]