PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G312400.1
Common NameB456_007G312400, LOC105801631
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 485aa    MW: 54138.3 Da    PI: 7.5276
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G312400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.5e-144390148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed  lv++v+ +G g+W+++ +  g+ R++k+c++rw ++l
  Gorai.007G312400.1 43 KGPWTAIEDAVLVEYVRSHGEGSWNAVQKNTGLARCGKSCRLRWVNHL 90
                        79*******************************************996 PP
2Myb_DNA-binding49.87.8e-1696139146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++++eE+++++++++++G++ W++ a  ++ gRt++++k++w++
  Gorai.007G312400.1  96 KGSFSPEEEKIIIELHAKMGNK-WARMATQLP-GRTDNEIKNYWNT 139
                         799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.8323890IPR017930Myb domain
SuperFamilySSF466891.41E-2840137IPR009057Homeodomain-like
SMARTSM007177.1E-124292IPR001005SANT/Myb domain
PfamPF002494.4E-134390IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-224497IPR009057Homeodomain-like
CDDcd001671.03E-94590No hitNo description
PROSITE profilePS5129425.13791145IPR017930Myb domain
SMARTSM007174.3E-1695143IPR001005SANT/Myb domain
PfamPF002495.1E-1596139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2598144IPR009057Homeodomain-like
CDDcd001671.43E-1198139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MMMMMGGNNQ FTAQNEGGEF LGSNGMNSGG VGGGREGEIP LKKGPWTAIE DAVLVEYVRS  60
HGEGSWNAVQ KNTGLARCGK SCRLRWVNHL RPNLKKGSFS PEEEKIIIEL HAKMGNKWAR  120
MATQLPGRTD NEIKNYWNTR VKRRQRQGLP LYPPHVQPFY SQHQHRQRHS HPPPTTAPNS  180
CFSFQTPIVS PHTSNPMPLH PLHIPHRPPP QNFLYNPHSA LTTPPPPLQS PNSASTPPPL  240
PSPSASTPHH ISPLHSPHNP PPFPTLPLIN YPNTTADDDF FHSNKRFKHD GLQSNNYNNN  300
HLDATSSRFT LPFSPMQHYS NRMTLDLPSS SRTTFNHHPH QDSGDFYPLK MDLRSNQIND  360
DGLLENMLQE AQALAANGNG GNNEIPKEMM YAAQNEEDYS RLINIDGPSS FGTAIPEWCN  420
DNGESSERQP SAIIDNENHL ALDMHHIASL HPADISPNHA ARSSSVRSWD NFPALEQSRF  480
LVKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30411445107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6159927e-76JX615992.1 Gossypium hirsutum clone NBRI_GE60319 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488302.10.0PREDICTED: myb-like protein A
TrEMBLA0A0D2R2P10.0A0A0D2R2P1_GOSRA; Uncharacterized protein
STRINGGorai.007G312400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51002747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.14e-69myb domain protein 101
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]