PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G312200.1
Common NameB456_007G312200, LOC105761177
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 211aa    MW: 23178 Da    PI: 9.2613
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G312200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-202575155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y+GVr ++ +gr++AeIrdp++   ++r++lg+f++ae+Aa+a++aa+++l+g
  Gorai.007G312200.1 25 PRYRGVRKRP-WGRFAAEIRDPVK---KTRVWLGTFDSAEDAARAYDAAARQLRG 75
                        68********.**********654...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.4E-142575IPR001471AP2/ERF domain
CDDcd000181.95E-182585No hitNo description
SuperFamilySSF541715.17E-232685IPR016177DNA-binding domain
PROSITE profilePS5103224.0122683IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-332684IPR001471AP2/ERF domain
SMARTSM003803.8E-382689IPR001471AP2/ERF domain
PRINTSPR003677.8E-112738IPR001471AP2/ERF domain
PRINTSPR003677.8E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRRGRVAAAV AEKPAVENNG SLKEPRYRGV RKRPWGRFAA EIRDPVKKTR VWLGTFDSAE  60
DAARAYDAAA RQLRGPKAKT NFPVNSSNIP AFGDDGRRLY PMGDFEDPEV NPQRPTRSSM  120
SSTVESFSGP RPAQLPPQKS TDFAAVSTRK YRPRTPPLAP EDCHSDCDSS SSVVDDGVIA  180
SSSRRRMLPF DLNFPPLDDA DDLHCTALCL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-212387269ATERF1
3gcc_A1e-212387269ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5552880.0KF555288.1 Gossypium barbadense ERF transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434367.11e-152PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9LDE42e-54ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A0D2SU541e-150A0A0D2SU54_GOSRA; Uncharacterized protein
STRINGGorai.007G312200.11e-151(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.14e-42ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]