PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G298300.1

Common Name

B456_007G298300, LOC105801620

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YB

Protein Properties

Length: 138aa MW: 15294.2 Da PI: 4.8035

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G298300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	143.9	3.9e-45	4	94	3	93
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 eq+ flPianv+rimk++lP ak+sk+aket+qecv+efisfvtseasdkc++ rkti gdd++wal+ +G+++y++++ yl+kyr + Gorai.007G298300.1 4 EQNPFLPIANVGRIMKQILPPSAKVSKEAKETMQECVTEFISFVTSEASDKCRKGSRKTICGDDICWALGAVGLDNYAQAMIRYLHKYRVA 94 89***************************************************************************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.2E-44	3	125	IPR009072	Histone-fold
SuperFamily	SSF47113	4.19E-35	5	121	IPR009072	Histone-fold
Pfam	PF00808	2.5E-25	8	72	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.1E-12	36	54	No hit	No description
PROSITE pattern	PS00685	0	39	55	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	5.1E-12	55	73	No hit	No description
PRINTS	PR00615	5.1E-12	74	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MGDEQNPFLP IANVGRIMKQ ILPPSAKVSK EAKETMQECV TEFISFVTSE ASDKCRKGSR 60 KTICGDDICW ALGAVGLDNY AQAMIRYLHK YRVAALNQQK ATTSSFEDKD EESDRSGEPS 120 HQEDETTTPQ VVMNIFI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	5e-36	4	92	3	91	Transcription factor HapC (Eurofung)
4g92_B	5e-36	4	92	3	91	Transcription factor HapC (Eurofung)
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012488295.1	1e-100	PREDICTED: nuclear transcription factor Y subunit B-5-like
Swissprot	O82248	2e-44	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A0D2PGT9	3e-99	A0A0D2PGT9_GOSRA; Uncharacterized protein
STRING	Gorai.007G298300.1	1e-100	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	9e-47	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	Gorai.007G298300.1
Entrez Gene	105801620

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]