PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G295600.1 | ||||||||
Common Name | B456_007G295600, LOC105804840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YC | ||||||||
Protein Properties | Length: 260aa MW: 28664.4 Da PI: 6.2277 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.6 | 2.4e-55 | 76 | 179 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 ql++fw++q +ek++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi Gorai.007G295600.1 76 QLQTFWANQyqeVEKVSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDI 166 89******99899****************************************************************************** PP NF-YC 89 fdflvdivprdel 101 fdflvdivpr++l Gorai.007G295600.1 167 FDFLVDIVPREDL 179 **********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.36E-33 | 67 | 170 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-21 | 98 | 161 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.0E-37 | 99 | 176 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDHQGHGQPP AMGIIGGGAQ MPYGTNPYPN QVTGAPNSGS VGGIQPSSQP TGAQLAQHQL 60 AYQQIHQQQQ QQLQQQLQTF WANQYQEVEK VSDFKNHSLP LARIKKIMKA DEDVRMISAE 120 APVIFARACE MFILELTLRS WNHTEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREDLK 180 DEVLASIPRG TVPVGGPADA LPYYMPAQHA PQVGTPGMIM GKPVMDPALY AQQSHPYMAQ 240 PQQMWPPPGP EQQQSSSDH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 6e-62 | 84 | 176 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 154 | RRTLQKN |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11867211, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012434105.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_012434106.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_012434107.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_012434108.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_016667403.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_016667408.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_016667413.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Swissprot | Q8L4B2 | 1e-88 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A0D2R1E6 | 0.0 | A0A0D2R1E6_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8HTX5 | 0.0 | A0A1U8HTX5_GOSHI; nuclear transcription factor Y subunit C-9-like | ||||
STRING | Gorai.007G295600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 2e-84 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G295600.1 |
Entrez Gene | 105804840 |