PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G284200.4

Common Name

B456_007G284200, LOC105804702

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CPP

Protein Properties

Length: 688aa MW: 75532.2 Da PI: 6.8354

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G284200.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47.8	2.9e-15	421	459	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCk+skClk+YC+Cfaag +C e C+C dC+Nk Gorai.007G284200.4 421 SCKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCLDCFNKP 459 689**********************************96 PP
2	TCR	53.4	4.9e-17	506	545	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnC+ks+ClkkYCeCf+ag+ Cs +C+Ce+CkN+ Gorai.007G284200.4 506 RHKRGCNCRKSSCLKKYCECFQAGVGCSPSCRCEGCKNSF 545 589***********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.5E-18	420	461	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.385	421	546	IPR005172	CRC domain
Pfam	PF03638	6.5E-11	423	458	IPR005172	CRC domain
SMART	SM01114	3.8E-17	506	547	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.2E-12	508	544	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence Send to blast
MDTPHKTQIT PTPTSSLSKF EDSPVFKYID SLSPIEQAKS SQTDNCFNSL AFLSPSSLFP 60 SPQINCHRES RFSVKRHHFS ADLNTRVLQS SNESNAGQEA SKAVEQSGLY DEHPGCLSND 120 SSSKGISSDL FDKQSDLAVE LPGTSKYDCR SPEDNLEACD ALLKKTSLEV VEQERSPFQR 180 SRDEWKERQR SFENERDLRK IRRIKPSEAA AGCGWVAVVS DVADMLTVNT SIIHENSDGQ 240 DQRTVDSGTT SFISNIPEFS LDNANNLENA ESGDHQGSCK QNELEESVTD QTSCILSTCL 300 PDKPVVTDSS LKKDDKGEKC SQLSRQRSIR RRCLVFEKSP GFGLHLNSLP NILKGQNPPN 360 KSILSSMKMG EVPSDNGTAV AENSSEAPAS VGGADADHNT PEKKSLILCR QKFELVEESA 420 SCKRCNCKRS KCLKLYCDCF AAGLYCIEPC SCLDCFNKPI HEKMVLETRK QIESRNPQAF 480 APKVIRSTDS VLDSWGENNK TPASARHKRG CNCRKSSCLK KYCECFQAGV GCSPSCRCEG 540 CKNSFGRKDG CDESGSDGEG LEACEKNASD KNSHDIVTHK NAEEHQDLPV ASNISRSSSQ 600 LCNTPEHGSS ESSLCQSKFN SNLQAIPEDE TPKVLKHKCL PLVPKTNSPP NSKRVSPPHH 660 ECSSSTAQRS RKLILKSIPS FPSFCPP*

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence Send to blast

MDTPHKTQIT PTPTSSLSKF EDSPVFKYID SLSPIEQAKS SQTDNCFNSL AFLSPSSLFP  60
SPQINCHRES RFSVKRHHFS ADLNTRVLQS SNESNAGQEA SKAVEQSGLY DEHPGCLSND  120
SSSKGISSDL FDKQSDLAVE LPGTSKYDCR SPEDNLEACD ALLKKTSLEV VEQERSPFQR  180
SRDEWKERQR SFENERDLRK IRRIKPSEAA AGCGWVAVVS DVADMLTVNT SIIHENSDGQ  240
DQRTVDSGTT SFISNIPEFS LDNANNLENA ESGDHQGSCK QNELEESVTD QTSCILSTCL  300
PDKPVVTDSS LKKDDKGEKC SQLSRQRSIR RRCLVFEKSP GFGLHLNSLP NILKGQNPPN  360
KSILSSMKMG EVPSDNGTAV AENSSEAPAS VGGADADHNT PEKKSLILCR QKFELVEESA  420
SCKRCNCKRS KCLKLYCDCF AAGLYCIEPC SCLDCFNKPI HEKMVLETRK QIESRNPQAF  480
APKVIRSTDS VLDSWGENNK TPASARHKRG CNCRKSSCLK KYCECFQAGV GCSPSCRCEG  540
CKNSFGRKDG CDESGSDGEG LEACEKNASD KNSHDIVTHK NAEEHQDLPV ASNISRSSSQ  600
LCNTPEHGSS ESSLCQSKFN SNLQAIPEDE TPKVLKHKCL PLVPKTNSPP NSKRVSPPHH  660
ECSSSTAQRS RKLILKSIPS FPSFCPP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-18	423	543	12	120	Protein lin-54 homolog
5fd3_B	3e-18	423	543	12	120	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492859.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X3
TrEMBL	A0A0D2SSM1	0.0	A0A0D2SSM1_GOSRA; Uncharacterized protein
STRING	Gorai.007G284200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	2e-70	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	Gorai.007G284200.4
Entrez Gene	105804702

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]