PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G284200.3 | ||||||||
Common Name | B456_007G284200, LOC105804702 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CPP | ||||||||
Protein Properties | Length: 683aa MW: 75002.5 Da PI: 6.8373 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47.8 | 2.8e-15 | 416 | 454 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCk+skClk+YC+Cfaag +C e C+C dC+Nk Gorai.007G284200.3 416 SCKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCLDCFNKP 454 689**********************************96 PP | |||||||
2 | TCR | 53.5 | 4.9e-17 | 501 | 540 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnC+ks+ClkkYCeCf+ag+ Cs +C+Ce+CkN+ Gorai.007G284200.3 501 RHKRGCNCRKSSCLKKYCECFQAGVGCSPSCRCEGCKNSF 540 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.5E-18 | 415 | 456 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.385 | 416 | 541 | IPR005172 | CRC domain |
Pfam | PF03638 | 6.4E-11 | 418 | 453 | IPR005172 | CRC domain |
SMART | SM01114 | 3.8E-17 | 501 | 542 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-12 | 503 | 539 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MDTPHKTQIT PTPTSSLSKF EDSPVFKYID SLSPIEQAKS SQTDNCFNSL AFLSPSSLFP 60 SPQINCHRES RFSVKRHHFS ADLNTRVLQS SNESNAGQEA SKAVEQSGLY DEHPGCLSND 120 SSSKGISSDL FDKQSDLAVE LPGTSKYDCR SPEDNLEACD ALLKKTSLEV VEQERSPFQR 180 SRDEWKERQR SFENERDLRK IRRIKPSEAA AGCGWVAVVS DVADMLTVNT SIIHENSDGQ 240 DQRTVDSGTT SFISNIPEFS LDNANNLENA ESGDHQGSCK QNELEESVTD QTSCILSTCL 300 PDKPVVTDSS LKKDDKGEKC SQLSRQRSIR RRCLVFEKSP GFGLHLNSLP NILKGQNPPN 360 KSILSSMKMG EVPSDNGTAV AENSSEAPAS VGGADADHNT PEKKRQKFEL VEESASCKRC 420 NCKRSKCLKL YCDCFAAGLY CIEPCSCLDC FNKPIHEKMV LETRKQIESR NPQAFAPKVI 480 RSTDSVLDSW GENNKTPASA RHKRGCNCRK SSCLKKYCEC FQAGVGCSPS CRCEGCKNSF 540 GRKDGCDESG SDGEGLEACE KNASDKNSHD IVTHKNAEEH QDLPVASNIS RSSSQLCNTP 600 EHGSSESSLC QSKFNSNLQA IPEDETPKVL KHKCLPLVPK TNSPPNSKRV SPPHHECSSS 660 TAQRSRKLIL KSIPSFPSFC PP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-18 | 418 | 538 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 3e-18 | 418 | 538 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012492860.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X4 | ||||
TrEMBL | A0A0D2SLC8 | 0.0 | A0A0D2SLC8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G284200.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 2e-70 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G284200.3 |
Entrez Gene | 105804702 |
Publications ? help Back to Top | |||
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