PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G284200.1
Common NameB456_007G284200, LOC105804702
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 706aa    MW: 77492.5 Da    PI: 7.0425
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G284200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.82.9e-15421459240
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         ++k+CnCk+skClk+YC+Cfaag +C e C+C dC+Nk 
  Gorai.007G284200.1 421 SCKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCLDCFNKP 459
                         689**********************************96 PP

2TCR53.45.1e-17506545140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         ++k+gCnC+ks+ClkkYCeCf+ag+ Cs +C+Ce+CkN+ 
  Gorai.007G284200.1 506 RHKRGCNCRKSSCLKKYCECFQAGVGCSPSCRCEGCKNSF 545
                         589***********************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.5E-18420461IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.385421546IPR005172CRC domain
PfamPF036386.7E-11423458IPR005172CRC domain
SMARTSM011143.8E-17506547IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12508544IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MDTPHKTQIT PTPTSSLSKF EDSPVFKYID SLSPIEQAKS SQTDNCFNSL AFLSPSSLFP  60
SPQINCHRES RFSVKRHHFS ADLNTRVLQS SNESNAGQEA SKAVEQSGLY DEHPGCLSND  120
SSSKGISSDL FDKQSDLAVE LPGTSKYDCR SPEDNLEACD ALLKKTSLEV VEQERSPFQR  180
SRDEWKERQR SFENERDLRK IRRIKPSEAA AGCGWVAVVS DVADMLTVNT SIIHENSDGQ  240
DQRTVDSGTT SFISNIPEFS LDNANNLENA ESGDHQGSCK QNELEESVTD QTSCILSTCL  300
PDKPVVTDSS LKKDDKGEKC SQLSRQRSIR RRCLVFEKSP GFGLHLNSLP NILKGQNPPN  360
KSILSSMKMG EVPSDNGTAV AENSSEAPAS VGGADADHNT PEKKSLILCR QKFELVEESA  420
SCKRCNCKRS KCLKLYCDCF AAGLYCIEPC SCLDCFNKPI HEKMVLETRK QIESRNPQAF  480
APKVIRSTDS VLDSWGENNK TPASARHKRG CNCRKSSCLK KYCECFQAGV GCSPSCRCEG  540
CKNSFGRKDG CDESGSDGEG LEACEKNASD KNSHDIVTHK NAEEHQDLPV ASNISRLPLA  600
YSGKFTGSFP HSIRSSSQLC NTPEHGSSES SLCQSKFNSN LQAIPEDETP KVLKHKCLPL  660
VPKTNSPPNS KRVSPPHHEC SSSTAQRSRK LILKSIPSFP SFCPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1842354312120Protein lin-54 homolog
5fd3_B3e-1842354312120Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492857.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A0D2TN610.0A0A0D2TN61_GOSRA; Uncharacterized protein
STRINGGorai.007G284200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17096510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-70TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]