PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G284200.1 | ||||||||
Common Name | B456_007G284200, LOC105804702 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CPP | ||||||||
Protein Properties | Length: 706aa MW: 77492.5 Da PI: 7.0425 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47.8 | 2.9e-15 | 421 | 459 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCk+skClk+YC+Cfaag +C e C+C dC+Nk Gorai.007G284200.1 421 SCKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCLDCFNKP 459 689**********************************96 PP | |||||||
2 | TCR | 53.4 | 5.1e-17 | 506 | 545 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnC+ks+ClkkYCeCf+ag+ Cs +C+Ce+CkN+ Gorai.007G284200.1 506 RHKRGCNCRKSSCLKKYCECFQAGVGCSPSCRCEGCKNSF 545 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.5E-18 | 420 | 461 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.385 | 421 | 546 | IPR005172 | CRC domain |
Pfam | PF03638 | 6.7E-11 | 423 | 458 | IPR005172 | CRC domain |
SMART | SM01114 | 3.8E-17 | 506 | 547 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-12 | 508 | 544 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 706 aa Download sequence Send to blast |
MDTPHKTQIT PTPTSSLSKF EDSPVFKYID SLSPIEQAKS SQTDNCFNSL AFLSPSSLFP 60 SPQINCHRES RFSVKRHHFS ADLNTRVLQS SNESNAGQEA SKAVEQSGLY DEHPGCLSND 120 SSSKGISSDL FDKQSDLAVE LPGTSKYDCR SPEDNLEACD ALLKKTSLEV VEQERSPFQR 180 SRDEWKERQR SFENERDLRK IRRIKPSEAA AGCGWVAVVS DVADMLTVNT SIIHENSDGQ 240 DQRTVDSGTT SFISNIPEFS LDNANNLENA ESGDHQGSCK QNELEESVTD QTSCILSTCL 300 PDKPVVTDSS LKKDDKGEKC SQLSRQRSIR RRCLVFEKSP GFGLHLNSLP NILKGQNPPN 360 KSILSSMKMG EVPSDNGTAV AENSSEAPAS VGGADADHNT PEKKSLILCR QKFELVEESA 420 SCKRCNCKRS KCLKLYCDCF AAGLYCIEPC SCLDCFNKPI HEKMVLETRK QIESRNPQAF 480 APKVIRSTDS VLDSWGENNK TPASARHKRG CNCRKSSCLK KYCECFQAGV GCSPSCRCEG 540 CKNSFGRKDG CDESGSDGEG LEACEKNASD KNSHDIVTHK NAEEHQDLPV ASNISRLPLA 600 YSGKFTGSFP HSIRSSSQLC NTPEHGSSES SLCQSKFNSN LQAIPEDETP KVLKHKCLPL 660 VPKTNSPPNS KRVSPPHHEC SSSTAQRSRK LILKSIPSFP SFCPP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-18 | 423 | 543 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 3e-18 | 423 | 543 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012492857.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
TrEMBL | A0A0D2TN61 | 0.0 | A0A0D2TN61_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G284200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17096 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-70 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G284200.1 |
Entrez Gene | 105804702 |
Publications ? help Back to Top | |||
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