PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G283800.1

Common Name

B456_007G283800, LOC105804699

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 668aa MW: 75557.8 Da PI: 6.5439

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G283800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.4	5e-15	121	182	2	68
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 W+++evlaL+++r+++e+++ + We+vs+k+++ gf+rs+ +Ckek+e+ n+++ i+ ++ Gorai.007G283800.1 121 WSNDEVLALLTVRSSIENWFPEF-----TWEHVSRKLADLGFKRSADKCKEKFEEENRYFNSINCSK 182 ******************998.....9*****************************9988665 PP
2	trihelix	95.9	3.7e-30	514	602	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r ++ ++ +k k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+++kkr s +s+tcpyf+ql Gorai.007G283800.1 514 RWPRDEVLALINLRCSLYNNGDHEKegtaIKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDINKKR-SLDSRTCPYFHQLS 602 8************9998888653344499***************************************8.9999******95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	16	117	174	IPR001005	SANT/Myb domain
Pfam	PF13837	2.8E-10	119	182	No hit	No description
PROSITE profile	PS50090	5.982	120	172	IPR017877	Myb-like domain
SMART	SM00717	0.24	511	577	IPR001005	SANT/Myb domain
Pfam	PF13837	7.3E-19	513	602	No hit	No description
CDD	cd12203	1.36E-24	513	582	No hit	No description
PROSITE profile	PS50090	6.539	514	575	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0001158	Molecular Function	enhancer sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MFDGVPDQLH QFIGASSASA RTTTTLLLPL SFTSSNGITS FDPLFTSSSN SHHQQVPPQL 60 HHHHQQQQQP QFLQSLHQQK NNEESTTSLV GMNMEINGRD QRSIAEPIDN LHRHHHHHHP 120 WSNDEVLALL TVRSSIENWF PEFTWEHVSR KLADLGFKRS ADKCKEKFEE ENRYFNSINC 180 SKNYRIFSEL EELYQAENPP PPPPHHHHHS QQQQVAVVAD ENNKNVEKSR EDEDNMGQNL 240 EADSRNIDEL YQTSPANNTA ISSDQDNKKV VENKANYDDN NAAAAATNKK RKRVKKLELF 300 KGFCEDIVNK LMIQQEEMHN KLIEDMVKRD EEKVAREEAW KKQELDRINQ ELELRAKEQA 360 IAGDRQATII KFLSKFSQTG SSKKQCFGRV NEDVVKVPSE CSNPPIASSS PLVAVAENPN 420 PIVTDQNKVD QVSTTSPSSM ILAHQNKQSM PISMTESQAP QNPNPETPDT SSLAPQNPNS 480 VSAESNPLPP TSPLTVNKAP QNPTSNEKED LGKRWPRDEV LALINLRCSL YNNGDHEKEG 540 TAIKAPLWER ISQGMLELGY KRSAKRCKEK WENINKYFRK TKDINKKRSL DSRTCPYFHQ 600 LSTLYSQGTL IAPSDGPENR SPLAENHPKL PETGKDSSQR GDKDSTVHVS GGNETNMVQV 660 PGFEFEF*

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MFDGVPDQLH QFIGASSASA RTTTTLLLPL SFTSSNGITS FDPLFTSSSN SHHQQVPPQL  60
HHHHQQQQQP QFLQSLHQQK NNEESTTSLV GMNMEINGRD QRSIAEPIDN LHRHHHHHHP  120
WSNDEVLALL TVRSSIENWF PEFTWEHVSR KLADLGFKRS ADKCKEKFEE ENRYFNSINC  180
SKNYRIFSEL EELYQAENPP PPPPHHHHHS QQQQVAVVAD ENNKNVEKSR EDEDNMGQNL  240
EADSRNIDEL YQTSPANNTA ISSDQDNKKV VENKANYDDN NAAAAATNKK RKRVKKLELF  300
KGFCEDIVNK LMIQQEEMHN KLIEDMVKRD EEKVAREEAW KKQELDRINQ ELELRAKEQA  360
IAGDRQATII KFLSKFSQTG SSKKQCFGRV NEDVVKVPSE CSNPPIASSS PLVAVAENPN  420
PIVTDQNKVD QVSTTSPSSM ILAHQNKQSM PISMTESQAP QNPNPETPDT SSLAPQNPNS  480
VSAESNPLPP TSPLTVNKAP QNPTSNEKED LGKRWPRDEV LALINLRCSL YNNGDHEKEG  540
TAIKAPLWER ISQGMLELGY KRSAKRCKEK WENINKYFRK TKDINKKRSL DSRTCPYFHQ  600
LSTLYSQGTL IAPSDGPENR SPLAENHPKL PETGKDSSQR GDKDSTVHVS GGNETNMVQV  660
PGFEFEF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	288	295	KKRKRVKK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00011	PBM	Transfer from AT5G28300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964202	1e-154	JX964202.1 Gossypium hirsutum clone NBRI_TRANS-471 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492854.1	0.0	PREDICTED: trihelix transcription factor GTL2 isoform X2
TrEMBL	A0A0D2SL93	0.0	A0A0D2SL93_GOSRA; Uncharacterized protein
STRING	Gorai.007G283800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8268	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	1e-108	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G283800.1
Entrez Gene	105804699

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]