PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G277300.1
Common NameB456_007G277300, LOC105804645
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 410aa    MW: 44771.3 Da    PI: 5.529
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G277300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.24.9e-15211266358
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                         ++kr rr+ +NRe+ArrsR+RK+a + eLe  v +L  eN  L k l  +++ + +
  Gorai.007G277300.1 211 DVKRVRRMLSNRESARRSRRRKQAHLTELESQVSQLRVENANLLKSLTDISQRYNE 266
                         68******************************************999988887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.5E-17209273IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.346211266IPR004827Basic-leucine zipper domain
PfamPF001702.8E-12212264IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-11213265No hitNo description
SuperFamilySSF579591.93E-11213262No hitNo description
PROSITE patternPS000360216231IPR004827Basic-leucine zipper domain
PfamPF124983.9E-33280404IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MHKTTKKPAN DPTNHTMDRV FSVEEVPDHF WSSSAADGGD DDKNKSPSSE MNRSASEWAF  60
QQFLREEVDK KGEDNEEEEA KENGCFENNK HDNSPADVED YQAFLKKKLN LACAAVAMSM  120
ASFAKPQDSA ARADSGPQAS NTPQLGSKTV SRGAGDKDDN AVAEVPSFPS GQKKLRAQVR  180
PSTSTGSSKE QSDEDEVEGE NETMENMDPA DVKRVRRMLS NRESARRSRR RKQAHLTELE  240
SQVSQLRVEN ANLLKSLTDI SQRYNEAAVN NRILKADVET LKAKVKMAVE AVKRTTGLNP  300
VFHALPEIPS MSSFDGCPSD TSTDAAVYEE DGPKHTLYQA AANDSISTHE LRINNALADI  360
SSVENIQPVS EGSAVTGNKI GRTASLQRVA SLEHLQKRIH GGVSLNGKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225232RRSRRRKQ
2227232SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492794.10.0PREDICTED: light-inducible protein CPRF2-like isoform X2
SwissprotQ990901e-117CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A0D2PFQ00.0A0A0D2PFQ0_GOSRA; Uncharacterized protein
STRINGGorai.007G277300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68462743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.23e-70bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]