PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G274700.6 | ||||||||
Common Name | B456_007G274700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 396aa MW: 43584.7 Da PI: 6.1573 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.7 | 3.1e-34 | 172 | 226 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+F+eav+qLGGse+AtPk il+lm+v+gLt++hvkSHLQkYR+ Gorai.007G274700.6 172 KPRMRWTPELHEAFLEAVNQLGGSERATPKGILKLMNVEGLTIYHVKSHLQKYRT 226 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.615 | 169 | 229 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.7E-19 | 170 | 226 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-31 | 171 | 227 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-25 | 172 | 226 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.7E-11 | 174 | 225 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.8E-23 | 259 | 303 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MLAMCFFPVS SGREVMENSA SLQESSLAPS NGTLGNSSLS PSIVTDHMCA SALPHVQYSH 60 NPAFISQSSR DLASLPPLAP NQLVESSTGV LASEDHNKKT NWQEWADDLI NVVDPDWSKI 120 LDNTNVLNPR VEVPKPSGDI SKQQPQFHQN QLVPHGEFSS HAYPSSTAPP TKPRMRWTPE 180 LHEAFLEAVN QLGGSERATP KGILKLMNVE GLTIYHVKSH LQKYRTARYM PETSEGTSEK 240 RITSIEEMKS IDLKTSIGIT EALRLQVEVQ KQLHEQLEIQ RNLQLRIEEQ GRYLQMMFEK 300 QKKVEDEKGG VPSSASDDLL APLPGSKHPP CNNGKSDSEA LEQDHSRTGI GPGNAGTNED 360 KSSSGVSTKQ KMLETESTVH DESGFSVSKR ARTEK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-30 | 172 | 229 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-30 | 172 | 229 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-30 | 172 | 229 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-30 | 172 | 229 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-30 | 172 | 229 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-30 | 172 | 229 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-30 | 172 | 229 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-30 | 172 | 229 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.1459 | 0.0 | flower| flowering |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012492742.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like isoform X3 | ||||
Swissprot | Q8GUN5 | 1e-87 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A0D2R058 | 0.0 | A0A0D2R058_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G274700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.2 | 5e-90 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G274700.6 |
Publications ? help Back to Top | |||
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