PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G274700.5 | ||||||||
Common Name | B456_007G274700, LOC105804607 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 434aa MW: 47759.3 Da PI: 5.9974 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.5 | 3.5e-34 | 210 | 264 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+F+eav+qLGGse+AtPk il+lm+v+gLt++hvkSHLQkYR+ Gorai.007G274700.5 210 KPRMRWTPELHEAFLEAVNQLGGSERATPKGILKLMNVEGLTIYHVKSHLQKYRT 264 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.615 | 207 | 267 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.88E-19 | 208 | 264 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-31 | 209 | 265 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-25 | 210 | 264 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.9E-11 | 212 | 263 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.1E-23 | 297 | 341 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MLAMCFFPVS SGREVMENSA SLQESSLAPS NGTLGNSSLS PSIVTDHMCA SALPHVQYSH 60 NPAFISQSSR DLASLPPLGA SFSQSTASLI HTQGNKDVSW SLDRLQMFLD LPENTPAPNQ 120 LVESSTGVLA SEDHNKKTNW QEWADDLINV VDPDWSKILD NTNVLNPRVE VPKPSGDISK 180 QQPQFHQNQL VPHGEFSSHA YPSSTAPPTK PRMRWTPELH EAFLEAVNQL GGSERATPKG 240 ILKLMNVEGL TIYHVKSHLQ KYRTARYMPE TSEGTSEKRI TSIEEMKSID LKTSIGITEA 300 LRLQVEVQKQ LHEQLEIQRN LQLRIEEQGR YLQMMFEKQK KVEDEKGGVP SSASDDLLAP 360 LPGSKHPPCN NGKSDSEALE QDHSRTGIGP GNAGTNEDKS SSGVSTKQKM LETESTVHDE 420 SGFSVSKRAR TEK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-30 | 210 | 267 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-30 | 210 | 267 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-30 | 210 | 267 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-30 | 210 | 267 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-30 | 210 | 267 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-30 | 210 | 267 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-30 | 210 | 267 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-30 | 210 | 267 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.1459 | 0.0 | flower| flowering |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012492742.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like isoform X3 | ||||
Swissprot | Q8GUN5 | 9e-93 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A0D2R060 | 0.0 | A0A0D2R060_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G274700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.2 | 4e-95 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G274700.5 |
Entrez Gene | 105804607 |
Publications ? help Back to Top | |||
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