PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G274700.1
Common NameB456_007G274700, LOC105804607
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 449aa    MW: 49356.9 Da    PI: 6.124
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G274700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.43.7e-34225279155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr+rWtpeLHe+F+eav+qLGGse+AtPk il+lm+v+gLt++hvkSHLQkYR+
  Gorai.007G274700.1 225 KPRMRWTPELHEAFLEAVNQLGGSERATPKGILKLMNVEGLTIYHVKSHLQKYRT 279
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.615222282IPR017930Myb domain
SuperFamilySSF466893.94E-19223279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-31224280IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-25225279IPR006447Myb domain, plants
PfamPF002491.0E-10227278IPR001005SANT/Myb domain
PfamPF143792.2E-23312356IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MPSSFLALTS FKDKYSTSPS SFQVSSGREV MENSASLQES SLAPSNGTLG NSSLSPSIVT  60
DHMCASALPH VQYSHNPAFI SQSSRDLASL PPLGASFSQS TASLIHTQGN KDVSWSLDRL  120
QMFLDLPENT PAPNQLVESS TGVLASEDHN KKTNWQEWAD DLINVVDPDW SKILDNTNVL  180
NPRVEVPKPS GDISKQQPQF HQNQLVPHGE FSSHAYPSST APPTKPRMRW TPELHEAFLE  240
AVNQLGGSER ATPKGILKLM NVEGLTIYHV KSHLQKYRTA RYMPETSEGT SEKRITSIEE  300
MKSIDLKTSI GITEALRLQV EVQKQLHEQL EIQRNLQLRI EEQGRYLQMM FEKQKKVEDE  360
KGGVPSSASD DLLAPLPGSK HPPCNNGKSD SEALEQDHSR TGIGPGNAGT NEDKSSSGVS  420
TKQKMLETES TVHDESGFSV SKRARTEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-30225282259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-30225282259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-30225282259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-30225282259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-30225282259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-30225282259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-30225282259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-30225282259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.14590.0flower| flowering
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492739.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
RefseqXP_012492740.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
SwissprotQ8GUN55e-99PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLA0A0D2TME40.0A0A0D2TME4_GOSRA; Uncharacterized protein
STRINGGorai.007G274700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.21e-101G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  5. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]