PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G260600.1 | ||||||||
Common Name | B456_007G260600, LOC105804452 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 318aa MW: 35659.1 Da PI: 8.71 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.4e-17 | 26 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde l++++k+ G g+W+t +++ g+ R++k+c++rw +yl Gorai.007G260600.1 26 RGPWTPEEDEVLANYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 73 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.3 | 2.3e-15 | 79 | 124 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Gorai.007G260600.1 79 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 124 678889****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-22 | 17 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.708 | 21 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.39E-28 | 23 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-12 | 25 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-15 | 26 | 73 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.48E-10 | 28 | 73 | No hit | No description |
PROSITE profile | PS51294 | 24.578 | 74 | 128 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 76 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-14 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-14 | 80 | 124 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.32E-11 | 84 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MKNPSLVGNS TSSKGTPCCS KVGIKRGPWT PEEDEVLANY IKREGEGRWR TLPKRAGLLR 60 CGKSCRLRWM NYLRPSVKRG RIAPDEEDLI LRLHRLLGNR WSLIAGRIPG RTDNEIKNYW 120 NTHLSKKLIS QGIDPRTHKP LNLITHKSPQ INHDPVPKSN PSPPIPNPSV LASKTITIKT 180 TNTTKDGTPT NLEHGYQQQS QNQQVDKSME KRHYTESATL IMGEPSSHGN EGDHMENCNE 240 DMFSSFLDSL INENLLVNQH PVEQQPNNLV APAAAAAESS QNLSHGDMWE TELISAMVGF 300 GNEPNSFNNH YHYLHQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-24 | 26 | 128 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012492537.1 | 0.0 | PREDICTED: transcription repressor MYB5-like | ||||
Swissprot | Q38850 | 3e-83 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A0D2SRF2 | 0.0 | A0A0D2SRF2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G260600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 3e-81 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G260600.1 |
Entrez Gene | 105804452 |
Publications ? help Back to Top | |||
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