PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G253500.1

Common Name

B456_007G253500, LOC105804386

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 472aa MW: 50775.1 Da PI: 7.4518

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G253500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.3e-39	86	145	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ Gorai.007G253500.1 86 PDKILPCPRCNSFDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 145 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	79	143	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-31	88	144	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.64	90	144	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	92	128	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MKGGDPAFKL FGRKIPMPQS QIHAGDSTIV EIETSQANTC QSITVENDTE ECRTSLKSNG 60 IRMNCIVKDE QVETNGTDQE KVFKKPDKIL PCPRCNSFDT KFCYFNNYNV NQPRHFCKNC 120 QRYWTAGGTM RNVPIGAGRR KNKHLASQYR QIIASSGGVP VTRIETPDST TQQLLSPGET 180 TTAMGNGTVL KFGTEAPLCE SMETVLSLGD QKRCVETSTV SSGEIREEPS LCGSSMTPCG 240 MPGNVMQKER IGSAGPNELN TKHPTQCYPV SPCIFPWNTG LSNVASMATG QCSSEHIGAP 300 NGTTSNTVQW CPAPMVAVPG FCPSNIQLQF VPAYWGCIPL WAPGGGNVSI SNSSGCLSPS 360 SSTSNSCGSG NGLPTLGKHY REANVVEEEQ SEKCILVPKT LRIDNPNEAS RSPIWATLGI 420 KPGQKDPLRG GKIFNAFESK AEGKDHVSDG SYILEANPAA LSRSHTFQES T*

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MKGGDPAFKL FGRKIPMPQS QIHAGDSTIV EIETSQANTC QSITVENDTE ECRTSLKSNG  60
IRMNCIVKDE QVETNGTDQE KVFKKPDKIL PCPRCNSFDT KFCYFNNYNV NQPRHFCKNC  120
QRYWTAGGTM RNVPIGAGRR KNKHLASQYR QIIASSGGVP VTRIETPDST TQQLLSPGET  180
TTAMGNGTVL KFGTEAPLCE SMETVLSLGD QKRCVETSTV SSGEIREEPS LCGSSMTPCG  240
MPGNVMQKER IGSAGPNELN TKHPTQCYPV SPCIFPWNTG LSNVASMATG QCSSEHIGAP  300
NGTTSNTVQW CPAPMVAVPG FCPSNIQLQF VPAYWGCIPL WAPGGGNVSI SNSSGCLSPS  360
SSTSNSCGSG NGLPTLGKHY REANVVEEEQ SEKCILVPKT LRIDNPNEAS RSPIWATLGI  420
KPGQKDPLRG GKIFNAFESK AEGKDHVSDG SYILEANPAA LSRSHTFQES T*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492438.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A0D2SR12	0.0	A0A0D2SR12_GOSRA; Uncharacterized protein
STRING	Gorai.007G253500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15591	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-67	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Gorai.007G253500.1
Entrez Gene	105804386

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]