PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G245200.1 | ||||||||
Common Name | B456_007G245200, LOC105804289 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 182aa MW: 20389.8 Da PI: 7.8161 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.2 | 1.9e-29 | 92 | 150 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk+s++pr+YY+C s gC+vkk++er+++d+++v++tYeg Hnhe Gorai.007G245200.1 92 MDDGYKWRKYGKKSVKNSPNPRNYYKCVSGGCNVKKRIERDRDDKSYVITTYEGVHNHE 150 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.4E-31 | 80 | 152 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-26 | 85 | 152 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.71 | 87 | 152 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-31 | 92 | 151 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.9E-23 | 93 | 150 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MSFCPTDHSN PNPNSIFFPE NPDPMADFEL SDYLMLDAGV FEDDTSEKGM GVANESATPK 60 HSNIRCKSGE KKSKLGLGHR IAFRMKSEIE AMDDGYKWRK YGKKSVKNSP NPRNYYKCVS 120 GGCNVKKRIE RDRDDKSYVI TTYEGVHNHE SPYTSYCNQM PLMAPNACIS QPSPFSSSFS 180 T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-23 | 82 | 152 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-23 | 82 | 152 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012492284.1 | 1e-134 | PREDICTED: probable WRKY transcription factor 51 isoform X2 | ||||
Swissprot | Q93WU9 | 3e-41 | WRK51_ARATH; Probable WRKY transcription factor 51 | ||||
TrEMBL | A0A0D2TKU2 | 1e-133 | A0A0D2TKU2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G245200.1 | 1e-134 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5711 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 2e-41 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G245200.1 |
Entrez Gene | 105804289 |
Publications ? help Back to Top | |||
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