PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G240900.1

Common Name

B456_007G240900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ARR-B

Protein Properties

Length: 219aa MW: 24926 Da PI: 7.8236

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G240900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	24.1	8.2e-08	158	181	3	27
G2-like 3 rlrWtpeLHerFveaveqLGGsekA 27 ++W+ eLH++Fv av+qL G++ + Gorai.007G240900.1 158 WVVWSVELHQQFVPAVNQL-GIDST 181 579****************.77654 PP
2	Response_reg	53.1	1.8e-18	28	128	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl+vdD+p+ ++ l+++l++ y +v+ + + al +l+e++ +D+i D+ mp+mdG++ll++i +lpii v ++g Gorai.007G240900.1 28 VLVVDDDPTCLRFLEKMLRNCSY-DVTKCNRVKTALSKLRENRngFDIITSDVYMPDMDGFKLLEHIGLDI-DLPIIKVVMKG-------- 108 89*******************.***********99999*********************6655.68888777544........ PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 ++ Ga d+l Kp+ +e+l + Gorai.007G240900.1 109 VRHGACDYLIKPVRIEALKN 128 68888888888888888865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	5.41E-28	24	131	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	6.1E-30	25	148	No hit	No description
SMART	SM00448	1.7E-18	26	130	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	26.702	27	134	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	7.8E-16	28	128	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	3.13E-20	29	131	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.5E-6	156	181	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0005622	Cellular Component	intracellular
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MSTASLLTTW KVRDVVPVPD QFPTSLRVLV VDDDPTCLRF LEKMLRNCSY DVTKCNRVKT 60 ALSKLRENRN GFDIITSDVY MPDMDGFKLL EHIGLDIDLP IIKVVMKGVR HGACDYLIKP 120 VRIEALKNIW KLEKLEKRKD NKDESEDKDD TSTLKTPWVV WSVELHQQFV PAVNQLGIDS 180 TILLPKYVGL AHEDAREHLK SFLLICASFS QKGCNIPK*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269\|PubMed:11370868, ECO:0000269\|PubMed:15173562, ECO:0000269\|PubMed:9891419}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269\|PubMed:11370868, ECO:0000269\|PubMed:11574878, ECO:0000269\|PubMed:15282545, ECO:0000269\|PubMed:16407152}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX587930	8e-46	JX587930.1 Gossypium hirsutum clone NBRI_GE22201 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012453255.1	5e-88	PREDICTED: two-component response regulator ARR2
Swissprot	Q9ZWJ9	5e-69	ARR2_ARATH; Two-component response regulator ARR2
TrEMBL	A0A0D2PE94	1e-159	A0A0D2PE94_GOSRA; Uncharacterized protein
STRING	Gorai.007G240900.1	1e-160	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2403	27	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-55	response regulator 2

Link Out ? help Back to Top
Phytozome	Gorai.007G240900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Takahashi N, et al. Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots. Curr. Biol., 2013. 23(18): p. 1812-7 [PMID:24035544] Ge XM, et al. Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis. Plant J., 2015. 82(1): p. 138-50 [PMID:25704455] Takahashi N,Umeda M Cytokinins promote onset of endoreplication by controlling cell cycle machinery. Plant Signal Behav, 2014. 9(8): p. e29396 [PMID:25763620] Kobayashi K, et al. Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling. Plant Physiol., 2017. 173(4): p. 2340-2355 [PMID:28193764] Arnaud D, et al. Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis. Plant Cell, 2017. 29(3): p. 543-559 [PMID:28254779] Zhang TQ, et al. A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration. Plant Cell, 2017. 29(5): p. 1073-1087 [PMID:28389585] Meng WJ, et al. Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. Plant Cell, 2017. 29(6): p. 1357-1372 [PMID:28576846] Zhang F,May A,Irish VF Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL. Trends Plant Sci., 2017. 22(10): p. 815-817 [PMID:28886911] Takatsuka H,Higaki T,Umeda M Actin Reorganization Triggers Rapid Cell Elongation in Roots. Plant Physiol., 2018. 178(3): p. 1130-1141 [PMID:30185441]