PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G226500.2
Common NameB456_007G226500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 678aa    MW: 75119.9 Da    PI: 7.0492
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G226500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-12327383155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Gorai.007G226500.2 327 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALKYWG 383
                         78*******************87776664446655.77******************98 PP
2AP246.41e-14428477355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Gorai.007G226500.2 428 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 477
                         9***************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-14327393IPR016177DNA-binding domain
PfamPF008471.3E-9327383IPR001471AP2/ERF domain
CDDcd000181.58E-18327391No hitNo description
PROSITE profilePS5103217.451328391IPR001471AP2/ERF domain
SMARTSM003801.1E-22328397IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-12328392IPR001471AP2/ERF domain
PRINTSPR003672.6E-6329340IPR001471AP2/ERF domain
CDDcd000182.12E-24426487No hitNo description
SuperFamilySSF541711.57E-17426486IPR016177DNA-binding domain
SMARTSM003803.7E-33427491IPR001471AP2/ERF domain
PROSITE profilePS5103219.19427485IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-18427485IPR001471AP2/ERF domain
PfamPF008471.8E-9428477IPR001471AP2/ERF domain
PRINTSPR003672.6E-6467487IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MKSMSNDDNN NNNNNSSNWL GFSLSSHMKM EVSNQGPNSN HKTQSAASGV TTAVPSSFFP  60
SPPSHLNYGL YFGVEGENGG LYSHFPVMPL KSDGSLCLME ALGRSQSQAM VPTSTPKLED  120
FFGGATMGTH HYESSDRETM ALSLDSMYYH QNPNQDHNSQ NCLDHLQHSS RQQHHQHQLQ  180
VQQYQYYSGY RNQEMLLAEE ADQETHVTDC NLQLPTMADD GSAAMKHWAS RNYSTEHSAM  240
NQKMIGCMGD NGADSGSIGA MAYGDLQSLS LSMSPGSQSS SVAGSQQISP SATDYAAMET  300
KKRGSEKVDQ KQIAHRKSID TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQSRKGR  360
QGGYDMEEKA ARAYDLAALK YWGPSTHINF PLENYQKELE EMKNMTRQEY VAHLRRKSSG  420
FSRGASMYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGANA  480
VTNFDITRYD VERIMASSTL LAGDLARRNK DIGPANEAIN HNLLAHNSYG ETNISPKNNG  540
SQPDWKIVLH QSPEQQMEMK QANMIENYKR QDFSLAPDNL VGMDTINSGQ REVDDSNKMG  600
THFSNASSLL TSLSSSTQGS SGSLDRNSLP LPFAMPAPPT KLFTSSTNSL NSWIPSAQLR  660
PALTVPTVPV FTAWTDA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.16811e-164flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488125421e-164
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492017.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-143CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0D2SPU90.0A0A0D2SPU9_GOSRA; Uncharacterized protein
STRINGGorai.007G226500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-127AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]