PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G222000.1 | ||||||||
Common Name | B456_007G222000, LOC105804011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 25518.1 Da PI: 8.5802 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101.2 | 9.9e-32 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++ Gorai.007G222000.1 2 SCNGCRVLRKGCSESCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWNGNWH 92 6****************************************************************************************** PP DUF260 87 leqlkaelall 97 ++q+++e++l+ Gorai.007G222000.1 93 VCQAAVETVLR 103 *****999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.882 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.2E-27 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWNGN WHVCQAAVET VLRGGSLRSM PELMAPTPAS 120 DEASEATCTD MWKLRETSTN LNSNCRFSNS RSRVSPKRKR VEEEFKKLQP SDLDLGLTPS 180 FTGKRVTDNR RPGTPSMNSE ESVTTTCFES VFADQQGQGS RGTDKKLLKL FV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 223 | 229 | DKKLLKL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX584284 | 4e-66 | JX584284.1 Gossypium hirsutum clone NBRI_GE17552 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012491941.1 | 1e-171 | PREDICTED: LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 5e-91 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A0D2SPK7 | 1e-170 | A0A0D2SPK7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G222000.1 | 1e-171 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 3e-86 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G222000.1 |
Entrez Gene | 105804011 |
Publications ? help Back to Top | |||
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