PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G218100.1
Common NameB456_007G218100, LOC105803965
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 311aa    MW: 33762.9 Da    PI: 7.0094
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G218100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.91.5e-201661147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + 
  Gorai.007G218100.1 16 KGPWSPEEDELLQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 61
                        79******************************.***********985 PP
2Myb_DNA-binding57.33.6e-1870112347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Gorai.007G218100.1  70 AFTPEEDETIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 112
                         79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.81166IPR017930Myb domain
SuperFamilySSF466898.24E-3313109IPR009057Homeodomain-like
SMARTSM007173.1E-181564IPR001005SANT/Myb domain
PfamPF002492.8E-201661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-271769IPR009057Homeodomain-like
CDDcd001671.59E-171860No hitNo description
SMARTSM007173.8E-1567115IPR001005SANT/Myb domain
PROSITE profilePS5129421.46768117IPR017930Myb domain
CDDcd001671.50E-1270113No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2370116IPR009057Homeodomain-like
PfamPF002491.2E-1570112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDVTSTPDRK EMDRIKGPWS PEEDELLQQL VQKHGPRNWS LISKSIPGRS GKSCRLRWCN  60
QLSPQVEHRA FTPEEDETII RAHARFGNKW ATIARLLNGR TDNAIKNHWN STLKRKCLPV  120
GEECNFVANG GYDGNLGGEE RQPLKRSVSA GLYMSPGSPS GSDVSDSSVP VLSSSHVYKP  180
IPRTGGVNVD VNVTPAGVEA ASSSNDPPTS LSLSLPGVES CEVVSTQPIT ESTQNRSEER  240
GGGVMGFSVE FMAVMQEMIR VEVRNYMTQM QQQQQQQNGA VSGGAGMGMC LDGGFRNLMA  300
VNRVGVSKIE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-41151173105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-401511757159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-401511757159MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-41151173105C-Myb DNA-Binding Domain
1msf_C5e-41151173105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.30470.0flower|seedling| flowering
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591211e-70AJ459121.1 Gossypium hirsutum partial myb104a gene, clone pGhMYB104a.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491895.10.0PREDICTED: transcription factor MYB44
SwissprotO231601e-113MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0D2SHX20.0A0A0D2SHX2_GOSRA; Uncharacterized protein
STRINGGorai.007G218100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-103myb domain protein 73
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]