PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G212100.4
Common NameB456_007G212100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 459aa    MW: 51595.7 Da    PI: 7.0999
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G212100.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.15.1e-21161251199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f k l++s+v++  ++ lp  f++ h ++ ++++t+tledesg+++ vk+  +k++    l++GW++F++a++L egD++vF+l++ ++f 
  Gorai.007G212100.4 161 FAKSLVRSHVGSCFWMGLPGMFCKIH-LP-RKDTTITLEDESGNQFHVKYYADKTG----LSAGWRQFCSAHNLLEGDVLVFQLVEPTKF- 244
                         889********************666.44.5788****************334444....***********************9876666. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          ++ ++r+
  Gorai.007G212100.4 245 -KIYIIRA 251
                         .8887775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-23153252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-25154252IPR015300DNA-binding pseudobarrel domain
CDDcd100174.08E-28159250No hitNo description
SMARTSM010197.5E-19161252IPR003340B3 DNA binding domain
PROSITE profilePS5086313.817161252IPR003340B3 DNA binding domain
PfamPF023627.0E-19161251IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
EEQNRKALAL AREGNSGHLL LLRSPCLLIT ELPVMDRRVK KEAEEIPQRT MSFAGRRLKS  60
AGEEDFILAL STHTPKLNPS SSEKKEISKK ANALTERKQK RKKCQSETII KPAVSDCGEK  120
KISSMKNKDV GDGRCIAEIK SPAMICAEEI QSNLEPEFPS FAKSLVRSHV GSCFWMGLPG  180
MFCKIHLPRK DTTITLEDES GNQFHVKYYA DKTGLSAGWR QFCSAHNLLE GDVLVFQLVE  240
PTKFKIYIIR ANDLNELDGA LGLLNLDAYT KQSDADDAET GPTVSKSTKR KRPKPLPLAS  300
VRKKNKRSGL QILSCNVGQP AEQSENDSEE VGSEVLEGFK RTEYAIQFKD ITSFENILVD  360
GLVIDPELSE DIRSKYYQLC CSQNAFLHEN IIQGAAETRR YFEAKAERDQ TENEIRNLEA  420
KLTELKDASK TFGFEMESLQ SKAETNEFRF EKEVKAPW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5825571e-125JX582557.1 Gossypium hirsutum clone NBRI_GE15408 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491791.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A0D2SNY80.0A0A0D2SNY8_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.007G212100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-33B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]