PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G212100.3
Common NameB456_007G212100, LOC105803906
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 403aa    MW: 45490.6 Da    PI: 5.2889
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G212100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.44.1e-2137127199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f k l++s+v++  ++ lp  f++ h ++ ++++t+tledesg+++ vk+  +k++    l++GW++F++a++L egD++vF+l++ ++f 
  Gorai.007G212100.3  37 FAKSLVRSHVGSCFWMGLPGMFCKIH-LP-RKDTTITLEDESGNQFHVKYYADKTG----LSAGWRQFCSAHNLLEGDVLVFQLVEPTKF- 120
                         889********************666.44.5788****************334444....***********************9876666. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          ++ ++r+
  Gorai.007G212100.3 121 -KIYIIRA 127
                         .8887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-2329128IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-2530128IPR015300DNA-binding pseudobarrel domain
CDDcd100179.73E-2835126No hitNo description
SMARTSM010197.5E-1937128IPR003340B3 DNA binding domain
PROSITE profilePS5086313.81737128IPR003340B3 DNA binding domain
PfamPF023625.6E-1937127IPR003340B3 DNA binding domain
PfamPF052661.8E-7277380IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MKNKDVGDGR CIAEIKSPAM ICAEEIQSNL EPEFPSFAKS LVRSHVGSCF WMGLPGMFCK  60
IHLPRKDTTI TLEDESGNQF HVKYYADKTG LSAGWRQFCS AHNLLEGDVL VFQLVEPTKF  120
KIYIIRANDL NELDGALGLL NLDAYTKQSD ADDAETGPTV SKSTKRKRPK PLPLASVRKK  180
NKRSGLQILS CNVGQPAEQS ENDSEEVGSE VLEGFKRTEY AIQFKDITSF ENILVDGLVI  240
DPELSEDIRS KYYQLCCSQN AFLHENIIQG ISFKFKVGII SETVNIADAI RTCKLTTSRD  300
EFDSWDRTLK AFELLGMNVG FLRTRLHRLV NLAFESEGAA ETRRYFEAKA ERDQTENEIR  360
NLEAKLTELK DASKTFGFEM ESLQSKAETN EFRFEKEVKA PW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491791.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A0D2QX130.0A0A0D2QX13_GOSRA; Uncharacterized protein
STRINGGorai.007G212100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-33B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]