PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G212100.2
Common NameB456_007G212100, LOC105803906
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 493aa    MW: 55619.2 Da    PI: 7.3756
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G212100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3665.7e-21127217199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f k l++s+v++  ++ lp  f++ h ++ ++++t+tledesg+++ vk+  +k++    l++GW++F++a++L egD++vF+l++ ++f 
  Gorai.007G212100.2 127 FAKSLVRSHVGSCFWMGLPGMFCKIH-LP-RKDTTITLEDESGNQFHVKYYADKTG----LSAGWRQFCSAHNLLEGDVLVFQLVEPTKF- 210
                         889********************666.44.5788****************334444....***********************9876666. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          ++ ++r+
  Gorai.007G212100.2 211 -KIYIIRA 217
                         .8887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-23119218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-25120218IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-27125216No hitNo description
PfamPF023627.8E-19127217IPR003340B3 DNA binding domain
PROSITE profilePS5086313.817127218IPR003340B3 DNA binding domain
SMARTSM010197.5E-19127218IPR003340B3 DNA binding domain
PfamPF052662.6E-7367470IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDRRVKKEAE EIPQRTMSFA GRRLKSAGEE DFILALSTHT PKLNPSSSEK KEISKKANAL  60
TERKQKRKKC QSETIIKPAV SDCGEKKISS MKNKDVGDGR CIAEIKSPAM ICAEEIQSNL  120
EPEFPSFAKS LVRSHVGSCF WMGLPGMFCK IHLPRKDTTI TLEDESGNQF HVKYYADKTG  180
LSAGWRQFCS AHNLLEGDVL VFQLVEPTKF KIYIIRANDL NELDGALGLL NLDAYTKQSD  240
ADDAETGPTV SKSTKRKRPK PLPLASVRKK NKRSGLQILS CNVGQPAEQS ENDSEEVGSE  300
VLEGFKRTEY AIQFKDITSF ENILVDGLVI DPELSEDIRS KYYQLCCSQN AFLHENIIQG  360
ISFKFKVGII SETVNIADAI RTCKLTTSRD EFDSWDRTLK AFELLGMNVG FLRTRLHRLV  420
NLAFESEGAA ETRRYFEAKA ERDQTENEIR NLEAKLTELK DASKTFGFEM ESLQSKAETN  480
EFRFEKEVKA PW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5825574e-74JX582557.1 Gossypium hirsutum clone NBRI_GE15408 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491791.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A0D2QX130.0A0A0D2QX13_GOSRA; Uncharacterized protein
STRINGGorai.007G212100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-33B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]