PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G212100.1 | ||||||||
Common Name | B456_007G212100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 524aa MW: 59055.4 Da PI: 7.8331 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 65.8 | 6.3e-21 | 161 | 251 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k l++s+v++ ++ lp f++ h ++ ++++t+tledesg+++ vk+ +k++ l++GW++F++a++L egD++vF+l++ ++f Gorai.007G212100.1 161 FAKSLVRSHVGSCFWMGLPGMFCKIH-LP-RKDTTITLEDESGNQFHVKYYADKTG----LSAGWRQFCSAHNLLEGDVLVFQLVEPTKF- 244 889********************666.44.5788****************334444....***********************9876666. PP .EEEEE-S CS B3 92 lvvkvfrk 99 ++ ++r+ Gorai.007G212100.1 245 -KIYIIRA 251 .8887775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.9E-23 | 153 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.06E-24 | 154 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.57E-27 | 159 | 250 | No hit | No description |
SMART | SM01019 | 7.5E-19 | 161 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.6E-19 | 161 | 251 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.817 | 161 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF05266 | 2.9E-7 | 398 | 501 | IPR007930 | Protein of unknown function DUF724 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
EEQNRKALAL AREGNSGHLL LLRSPCLLIT ELPVMDRRVK KEAEEIPQRT MSFAGRRLKS 60 AGEEDFILAL STHTPKLNPS SSEKKEISKK ANALTERKQK RKKCQSETII KPAVSDCGEK 120 KISSMKNKDV GDGRCIAEIK SPAMICAEEI QSNLEPEFPS FAKSLVRSHV GSCFWMGLPG 180 MFCKIHLPRK DTTITLEDES GNQFHVKYYA DKTGLSAGWR QFCSAHNLLE GDVLVFQLVE 240 PTKFKIYIIR ANDLNELDGA LGLLNLDAYT KQSDAETGPT VSKSTKRKRP KPLPLASVRK 300 KNKRSGLQIL SCNVGQPAEQ SENDSEEVGS EVLEGFKRTE YAIQFKDITS FENILVDGLV 360 IDPELSEDIR SKYYQLCCSQ NAFLHENIIQ GISFKFKVGI ISETVNIADA IRTCKLTTSR 420 DEFDSWDRTL KAFELLGMNV GFLRTRLHRL VNLAFESEGA AETRRYFEAK AERDQTENEI 480 RNLEAKLTEL KDASKTFGFE MESLQSKAET NEFRFEKEVK APW* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX582557 | 1e-125 | JX582557.1 Gossypium hirsutum clone NBRI_GE15408 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012491792.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2 | ||||
TrEMBL | A0A0D2TJ00 | 0.0 | A0A0D2TJ00_GOSRA; Uncharacterized protein (Fragment) | ||||
STRING | Gorai.007G212100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16837 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 4e-33 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G212100.1 |
Publications ? help Back to Top | |||
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