PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G209200.3 | ||||||||
Common Name | B456_007G209200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 490aa MW: 55529.7 Da PI: 9.1651 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.8 | 1.4e-16 | 109 | 194 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.....yvltkGWkeFvkangLkegDfvvFkl 84 ff v++++ + ++ ++pk+f +++ ++ ++ +++l d+sg++W+ +++ + + l +GW Fv++n+L++gD++ F+l Gorai.007G209200.3 109 FFLVFMQPTYVGLHSKSIPKEFSRKYLMD--QG-DVILCDSSGNTWSAQYRAtlG----MngqpyVKLLNGWDAFVRDNNLQVGDVCAFEL 192 777888888888889***********656..22.7***************66541....22245577889********************8 PP -S CS B3 85 dg 86 ++ Gorai.007G209200.3 193 ID 194 75 PP | |||||||
2 | B3 | 58.9 | 9e-19 | 265 | 361 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrs 88 f+ vl ps+v +++ l+++++f+++h + + +++ + l+ ++g+sW ++ +s + + +GW+ Fv++n+Lk+gD++vF+l++++ Gorai.007G209200.3 265 FVVVLRPSYVQSHA-LCISNDFTRKHFKTTLTNIGIALRLSNGKSWPAEYHQ--RSIGnpnARICNGWRAFVNDNKLKVGDVCVFELVSDT 352 67788888888887.***********888899999***************33..333334677889*********************9988 PP EE..EEEEE CS B3 89 efelvvkvf 97 + + +v +f Gorai.007G209200.3 353 QISVKVIIF 361 877777666 PP | |||||||
3 | B3 | 40.7 | 4.2e-13 | 401 | 483 | 9 | 95 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + k++++ +p +f+e++ +++ ++ l+l + r+W v+++ + + + lt+GW +F+++n L+egD++v +ld ++ l+v+ Gorai.007G209200.3 401 HL-KEDCVDIPFRFVEQYFEPNVQK--LIL-QVADRTWPVEITSNPRIRIAKLTSGWIKFARENSLREGDICVYELDTVDNNLLKVS 483 44.45559**********7675564..554.4477*******77777777*************************987666556665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.447 | 1 | 46 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.26E-7 | 2 | 44 | No hit | No description |
SuperFamily | SSF101936 | 2.16E-10 | 3 | 53 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-10 | 5 | 55 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-20 | 102 | 206 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.42E-20 | 103 | 206 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.96E-19 | 108 | 206 | No hit | No description |
Pfam | PF02362 | 5.0E-15 | 109 | 194 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.155 | 109 | 208 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.9E-11 | 110 | 208 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.73E-22 | 258 | 358 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.3E-24 | 258 | 359 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.64E-18 | 263 | 359 | No hit | No description |
PROSITE profile | PS50863 | 12.971 | 264 | 364 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.2E-17 | 265 | 362 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.6E-14 | 265 | 364 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-16 | 388 | 485 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.26E-13 | 391 | 482 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.35E-15 | 392 | 486 | No hit | No description |
PROSITE profile | PS50863 | 11.984 | 392 | 488 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.3E-10 | 393 | 488 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-10 | 401 | 483 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MKLDGKLWVQ NGWRKFTEHY SLELGHFLVF RYQRNCRFHV LIFDRSASEI HYPYANNIST 60 DMTKKPVLQC PRPPKIMRAS NNGFSATKGN EKSKALERAS SAIKSGNPFF LVFMQPTYVG 120 LHSKSIPKEF SRKYLMDQGD VILCDSSGNT WSAQYRATLG MNGQPYVKLL NGWDAFVRDN 180 NLQVGDVCAF ELIDCIDISF QVVIYSSKKA DFHGSPAQME AGMTLTRSEC LEPVKARETA 240 FHREMKVREK ALQRALAFTS ENPFFVVVLR PSYVQSHALC ISNDFTRKHF KTTLTNIGIA 300 LRLSNGKSWP AEYHQRSIGN PNARICNGWR AFVNDNKLKV GDVCVFELVS DTQISVKVII 360 FQAIADEDSH PSQGASEEAL GLTSQSAKAP LIFRRVVLPL HLKEDCVDIP FRFVEQYFEP 420 NVQKLILQVA DRTWPVEITS NPRIRIAKLT SGWIKFAREN SLREGDICVY ELDTVDNNLL 480 KVSISKYAS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012491740.1 | 0.0 | PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X3 | ||||
TrEMBL | A0A0D2QWQ8 | 0.0 | A0A0D2QWQ8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G209200.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 3e-16 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G209200.3 |
Publications ? help Back to Top | |||
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