PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G209200.1

Common Name

B456_007G209200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 632aa MW: 71855.4 Da PI: 9.2673

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G209200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.7	3.3e-16	93	184	2	100
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 fkv +++ + g l +p kfa+++g+k s + +e ++g++We++l k +g+ + ++GW++F + L+ g f+vF+++++ +f Gorai.007G209200.1 93 FKVI-LESTIRDGKLGIPHKFAKDYGSK--LSSPVFFEVPNGEVWELEL--MKLDGKLWVQNGWRKFTEHYSLELGHFLVFRYQRNCRF-- 176 5555.356677788*********988..5557***********..****************************999999.. PP EEEEE-SS CS B3 93 vvkvfrks 100 +v +f++s Gorai.007G209200.1 177 HVLIFDRS 184 ***985 PP
2	B3	49.9	5.8e-16	260	336	13	86
T...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 13 s...grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.....yvltkGWkeFvkangLkegDfvvFkldg 86 + ++l++pk+f +++ ++ ++ +++l d+sg++W+ +++ + + l +GW Fv++n+L++gD++ F+l++ Gorai.007G209200.1 260 HskvSCLSIPKEFSRKYLMD--QG-DVILCDSSGNTWSAQYRAtlG----MngqpyVKLLNGWDAFVRDNNLQVGDVCAFELID 336 4445669********656..22.7***********66541....22245577889******************875 PP
3	B3	58.3	1.3e-18	407	503	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrs 88 f+ vl ps+v +++ l+++++f+++h + + +++ + l+ ++g+sW ++ +s + + +GW+ Fv++n+Lk+gD++vF+l++++ Gorai.007G209200.1 407 FVVVLRPSYVQSHA-LCISNDFTRKHFKTTLTNIGIALRLSNGKSWPAEYHQ--RSIGnpnARICNGWRAFVNDNKLKVGDVCVFELVSDT 494 67788888888887.*********888899999***********33..333334677889*******************9988 PP EE..EEEEE CS B3 89 efelvvkvf 97 + + +v +f Gorai.007G209200.1 495 QISVKVIIF 503 877777666 PP
4	B3	40.2	6.2e-13	543	625	9	95
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + k++++ +p +f+e++ +++ ++ l+l + r+W v+++ + + + lt+GW +F+++n L+egD++v +ld ++ l+v+ Gorai.007G209200.1 543 HL-KEDCVDIPFRFVEQYFEPNVQK--LIL-QVADRTWPVEITSNPRIRIAKLTSGWIKFARENSLREGDICVYELDTVDNNLLKVS 625 44.45559********7675564..554.4477***77777777***********************987666556665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.14E-24	85	184	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.8E-23	86	184	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.01E-18	91	182	No hit	No description
PROSITE profile	PS50863	13.676	91	184	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.4E-13	92	183	IPR003340	B3 DNA binding domain
SMART	SM01019	3.4E-18	92	184	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	9.2E-20	240	348	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.59E-20	243	348	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.93E-19	246	348	No hit	No description
SMART	SM01019	1.0E-9	248	350	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.437	251	350	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.0E-14	263	336	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.4E-23	400	501	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.49E-22	400	500	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.66E-18	405	501	No hit	No description
PROSITE profile	PS50863	12.971	406	506	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-16	407	504	IPR003340	B3 DNA binding domain
SMART	SM01019	5.6E-14	407	506	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.8E-16	530	627	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.88E-13	533	624	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.02E-14	534	628	No hit	No description
PROSITE profile	PS50863	11.984	534	630	IPR003340	B3 DNA binding domain
SMART	SM01019	6.3E-10	535	630	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-10	543	625	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 632 aa Download sequence Send to blast
HLLKRTKFSS TSLGYNWLTV IITHHQDLKI SRNNGVLVGN FEKKNYEYIN HLFVIAVLHK 60 FSKNLISELP SHSTMAYHHG RVDGYSPEPY HFFKVILEST IRDGKLGIPH KFAKDYGSKL 120 SSPVFFEVPN GEVWELELMK LDGKLWVQNG WRKFTEHYSL ELGHFLVFRY QRNCRFHVLI 180 FDRSASEIHY PYANNISTDM TKKPVLQCPR PPKIMRASNN GFSATKGNEK SKALERASSA 240 IKSGNPFFLV FMQPTYVGLH SKVSCLSIPK EFSRKYLMDQ GDVILCDSSG NTWSAQYRAT 300 LGMNGQPYVK LLNGWDAFVR DNNLQVGDVC AFELIDCIDI SFQVVIYSSK KADFHGSPAQ 360 MEAGMTLTRS ECLEPVKARE TAFHREMKVR EKALQRALAF TSENPFFVVV LRPSYVQSHA 420 LCISNDFTRK HFKTTLTNIG IALRLSNGKS WPAEYHQRSI GNPNARICNG WRAFVNDNKL 480 KVGDVCVFEL VSDTQISVKV IIFQAIADED SHPSQGASEE ALGLTSQSAK APLIFRRVVL 540 PLHLKEDCVD IPFRFVEQYF EPNVQKLILQ VADRTWPVEI TSNPRIRIAK LTSGWIKFAR 600 ENSLREGDIC VYELDTVDNN LLKVSISKYA S*

Sequence ? help Back to Top

Protein Sequence Length: 632 aa Download sequence Send to blast

HLLKRTKFSS TSLGYNWLTV IITHHQDLKI SRNNGVLVGN FEKKNYEYIN HLFVIAVLHK  60
FSKNLISELP SHSTMAYHHG RVDGYSPEPY HFFKVILEST IRDGKLGIPH KFAKDYGSKL  120
SSPVFFEVPN GEVWELELMK LDGKLWVQNG WRKFTEHYSL ELGHFLVFRY QRNCRFHVLI  180
FDRSASEIHY PYANNISTDM TKKPVLQCPR PPKIMRASNN GFSATKGNEK SKALERASSA  240
IKSGNPFFLV FMQPTYVGLH SKVSCLSIPK EFSRKYLMDQ GDVILCDSSG NTWSAQYRAT  300
LGMNGQPYVK LLNGWDAFVR DNNLQVGDVC AFELIDCIDI SFQVVIYSSK KADFHGSPAQ  360
MEAGMTLTRS ECLEPVKARE TAFHREMKVR EKALQRALAF TSENPFFVVV LRPSYVQSHA  420
LCISNDFTRK HFKTTLTNIG IALRLSNGKS WPAEYHQRSI GNPNARICNG WRAFVNDNKL  480
KVGDVCVFEL VSDTQISVKV IIFQAIADED SHPSQGASEE ALGLTSQSAK APLIFRRVVL  540
PLHLKEDCVD IPFRFVEQYF EPNVQKLILQ VADRTWPVEI TSNPRIRIAK LTSGWIKFAR  600
ENSLREGDIC VYELDTVDNN LLKVSISKYA S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012491737.1	0.0	PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1
Refseq	XP_012491738.1	0.0	PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1
TrEMBL	A0A0D2TIU7	0.0	A0A0D2TIU7_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.007G209200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18343	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-24	B3 family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G209200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]