PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G208600.1
Common NameB456_007G208600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 337aa    MW: 39093.6 Da    PI: 9.2296
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G208600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.2e-1627116199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk+l     ++++ l++pkkf+e++ +k     t+  + +sg  W+v++  +k  +++v+++GW  Fv++++L+  D +vF+++g+s f 
  Gorai.007G208600.1  27 FFKIL--VGDFRNH-LRVPKKFTENFREK--LLGTIHRRGPSGFMWTVEV--EKMFNHVVFQNGWPTFVEEHRLEKADLLVFRYIGNSAF- 109
                         66666..5666777.9*******777644..4459**9************..***********************************999. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +v +f++
  Gorai.007G208600.1 110 -NVVIFDS 116
                         .8888876 PP
2B339.21.3e-122493103598
                         EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         tl    +++++W+v++  r +  ++ +t+GW +Fv +n+L + D++vF+l+++ +++ + +vf+
  Gorai.007G208600.1 249 TLLRVPPQNKVWDVRI--RSSIWGTAFTRGWAKFVLDNNLGSHDTCVFELSDEGKANGYTMVFD 310
                         344445899*******..66666699***********************998776666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-2219119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2120119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.77424117IPR003340B3 DNA binding domain
SMARTSM010197.0E-1327117IPR003340B3 DNA binding domain
CDDcd100173.98E-1527115No hitNo description
PfamPF023623.6E-1427116IPR003340B3 DNA binding domain
SMARTSM010190.96213317IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-12247315IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.827249312IPR003340B3 DNA binding domain
PfamPF023626.8E-10253310IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-11254315IPR015300DNA-binding pseudobarrel domain
CDDcd100175.39E-9255315No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAATTQKCRV LEKNKYWKEF ESNRHQFFKI LVGDFRNHLR VPKKFTENFR EKLLGTIHRR  60
GPSGFMWTVE VEKMFNHVVF QNGWPTFVEE HRLEKADLLV FRYIGNSAFN VVIFDSSGCV  120
REGSYFVREH TNACSNDGCV LDKEDGEDCE DIIDLEKPHI QKRKIKKGRG RPSSKAVDAD  180
NQKKRPRVIK SAVEGEVSID EPDGAPGCAM EDCVEQNLQG SYSLYFILKR REITEEEKQR  240
PRKLSRQRTL LRVPPQNKVW DVRIRSSIWG TAFTRGWAKF VLDNNLGSHD TCVFELSDEG  300
KANGYTMVFD VIIFRVLDEI VPLKKFSRTQ TRTAWF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022751325.11e-143B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A0D2PCS30.0A0A0D2PCS3_GOSRA; Uncharacterized protein
STRINGGorai.007G208600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2512634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-24B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]