PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G206000.2
Common NameB456_007G206000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 169aa    MW: 20179.2 Da    PI: 9.6877
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G206000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.2e-1961115357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         k++++++eql+ Le  F +++++  e++ ++A++lgL+ rqV vWFqNrRa++k+
  Gorai.007G206000.2  61 KKRKLNQEQLTLLELNFGNEHKLESERKDRIASELGLDPRQVAVWFQNRRARWKN 115
                         45689************************************************95 PP
2HD-ZIP_I/II112.43e-3661145286
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                         kkr+l++eq++lLE +F +e+kLe+erK ++a+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ +++++ +++rLe+ev +
  Gorai.007G206000.2  61 KKRKLNQEQLTLLELNFGNEHKLESERKDRIASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKSLHETVVLDKCRLESEVCK 145
                         9*******************************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.7E-1659120IPR001356Homeobox domain
PROSITE profilePS5007116.00161116IPR001356Homeobox domain
SuperFamilySSF466895.72E-1761123IPR009057Homeodomain-like
PfamPF000466.9E-1761115IPR001356Homeobox domain
CDDcd000867.61E-1461117No hitNo description
Gene3DG3DSA:1.10.10.601.6E-1963123IPR009057Homeodomain-like
PRINTSPR000312.3E-58796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000312.3E-596112IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSQDYEMMTS QMNEHEDHIA LISQIYPGFY TQIATHQGEP KPRRRRKKNK GGENSQWAVA  60
KKRKLNQEQL TLLELNFGNE HKLESERKDR IASELGLDPR QVAVWFQNRR ARWKNKKLEE  120
EYSKLKSLHE TVVLDKCRLE SEVCKYTYIF YFPNEIILTC KKQIIIWF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14563RKKNKGGENSQWAVAKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491697.11e-102PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232083e-53ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A0D2SNM71e-123A0A0D2SNM7_GOSRA; Uncharacterized protein
STRINGGorai.007G206000.11e-102(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.19e-33homeobox protein 40
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]