PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G200600.1
Common NameB456_007G200600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 203aa    MW: 23180 Da    PI: 7.294
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G200600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1391.8e-1265118558
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                         ++ +r+++NReAArrsR RK+++++ L   v +L  eN +   +++  ++ + +
  Gorai.007G200600.1  65 RKRKRMASNREAARRSRMRKQKQLDDLMGQVSQLAHENNQILVNINITTQIYLN 118
                         5789**********************************9988887766666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.0E-1361125IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.5E-1063106No hitNo description
PROSITE profilePS5021710.26663105IPR004827Basic-leucine zipper domain
PfamPF001705.5E-1065106IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.48E-1165118No hitNo description
CDDcd147021.32E-1666116No hitNo description
PROSITE patternPS0003606883IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSPVVSEILL SGLMINSTLR RRTHLVQSFS VVFLYWFYVT GSSSSSTTPR SSSSVEEFQQ  60
VLNERKRKRM ASNREAARRS RMRKQKQLDD LMGQVSQLAH ENNQILVNIN ITTQIYLNIE  120
AENAVLRAQM AELSTRLQSL NEINDFINSN NGVFGYDHPN NYEAAHDHHH HQVNDDTLMN  180
NPWGCFYGNQ PLNIASADMI MY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16485RKRKRMASNREAARRSRMRKQK
27784RRSRMRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot meristem during vegetative to reproductive phase transition. {ECO:0000269|PubMed:22319055}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to specific DNA sequences in target gene promoters. BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000250|UniProtKB:O65683, ECO:0000269|PubMed:29348240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00267DAPTransfer from AT2G18160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491624.11e-119PREDICTED: ocs element-binding factor 1-like
SwissprotQ9SI151e-38BZIP2_ARATH; bZIP transcription factor 2
TrEMBLA0A0D2TI921e-149A0A0D2TI92_GOSRA; Uncharacterized protein
STRINGGorai.007G200600.11e-149(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18160.17e-41basic leucine-zipper 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]