PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G197900.2 | ||||||||
Common Name | B456_007G197900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 347aa MW: 38104.5 Da PI: 5.6846 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.4 | 2.2e-19 | 262 | 296 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+tkTp+WR gp g ktLCnaCG+++++ +l Gorai.007G197900.2 262 CSHCGVTKTPQWRAGPMGAKTLCNACGVRFKSGRL 296 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 3.0E-90 | 1 | 339 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 3.8E-18 | 256 | 310 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.229 | 256 | 292 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.23E-14 | 258 | 319 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.8E-15 | 260 | 294 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.40E-14 | 261 | 309 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 262 | 287 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.2E-17 | 262 | 296 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MECVEAALKT SFRKEMALKP SPQAFLEDIW VVNGQNGVSC DDFSVDDLFD FSNEEGFLQQ 60 KREDEEDEEE EEVPASSSLP KRQKLSQDNA HFSNDSTTNF DYGSLSTNEL AVPADDVENL 120 EWLSHFVEDS FLEHSTVYPT GTLMEKPKLL DGKFPEPEKS VTTTACFETP VPAKARSKRV 180 RTGGRVWSLV ATPSLTESSS SSTSSSSSSS PSPWMFCPNS GSGSIFELSE PLSVEKPPVK 240 KHKKRPSTDT TGCNGTQPTR RCSHCGVTKT PQWRAGPMGA KTLCNACGVR FKSGRLLPEY 300 RPACSPTFSS ELHSNHHRKV LEMRRKKETL GQAEPGLTPP VVPSFG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 238 | 245 | VKKHKKRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012487835.1 | 0.0 | PREDICTED: GATA transcription factor 5-like, partial | ||||
Swissprot | Q9FH57 | 2e-97 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A0D2TI86 | 0.0 | A0A0D2TI86_GOSRA; GATA transcription factor | ||||
STRING | Gorai.007G197900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 7e-92 | GATA transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G197900.2 |
Publications ? help Back to Top | |||
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