PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G197900.1
Common NameB456_007G197900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 352aa    MW: 38689.2 Da    PI: 5.6846
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G197900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.3e-19267301135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         Cs+Cg+tkTp+WR gp g ktLCnaCG+++++ +l
  Gorai.007G197900.1 267 CSHCGVTKTPQWRAGPMGAKTLCNACGVRFKSGRL 301
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.7E-871344IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.229261297IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-18261315IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.33E-14263324No hitNo description
Gene3DG3DSA:3.30.50.105.9E-15265299IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.12E-14266314No hitNo description
PfamPF003203.3E-17267301IPR000679Zinc finger, GATA-type
PROSITE patternPS003440267292IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MECVEAALKT SFRKEMALKP SPQAFLEDIW VVNGQNGVSC DDFSVDDLFD FSNEEGFLQQ  60
KREDEEDEEE EEVPASSSLP KRQKLSQDNA HFSNDSTTNF DYGSLSTNEL AVPVPFLQAD  120
DVENLEWLSH FVEDSFLEHS TVYPTGTLME KPKLLDGKFP EPEKSVTTTA CFETPVPAKA  180
RSKRVRTGGR VWSLVATPSL TESSSSSTSS SSSSSPSPWM FCPNSGSGSI FELSEPLSVE  240
KPPVKKHKKR PSTDTTGCNG TQPTRRCSHC GVTKTPQWRA GPMGAKTLCN ACGVRFKSGR  300
LLPEYRPACS PTFSSELHSN HHRKVLEMRR KKETLGQAEP GLTPPVVPSF G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243250VKKHKKRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3135181e-106KF313518.1 Firmiana danxiaensis microsatellite a4964_SSR62 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487835.10.0PREDICTED: GATA transcription factor 5-like, partial
SwissprotQ9FH576e-95GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A0D2SGN80.0A0A0D2SGN8_GOSRA; GATA transcription factor
STRINGGorai.007G197900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-89GATA transcription factor 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]