PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G196600.1
Common NameB456_007G196600, LOC105801522
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 407aa    MW: 46278.2 Da    PI: 8.8263
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G196600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.61.8e-141050242
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         ie +  r  t+ kR++ + KKA+E S+LCd+ev++iif +
  Gorai.007G196600.1 10 LIEKEKARAATLKKRLQSLKKKAHEFSTLCDVEVCMIIFEP 50
                        699999********************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.0E-14164IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.568148IPR002100Transcription factor, MADS-box
CDDcd002661.34E-20268No hitNo description
PRINTSPR004044.8E-8323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.27E-18391IPR002100Transcription factor, MADS-box
PfamPF003199.5E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MARRKLKMKL IEKEKARAAT LKKRLQSLKK KAHEFSTLCD VEVCMIIFEP ELKDSPSRVE  60
VWPSDPVQVE TIIGRYNTMA TSGSQKKTFS ISDFFNMCRR QARDEVAQVC KANFKAKFPT  120
WDDRIDNFSP EHIASCLTKL DSNIEVVKRK IMLMKGDDEQ KLLRSELRTL GGFGARSTLS  180
SSDNYIPAAA LHLWNRSLLD NNIQTHTPLE IVNHFDLIQD IPRKNSEFGV IRDQPPLPAR  240
PLDMQLPSFS PADEALVKLS LSLNPIEKSL RMSMMNDLGF GVRSGIASSS KNSFPNNAMY  300
NPPPSYSICH DPRFGMPSND VMFDSASMPV LHDPRSNGVQ NNVMLKEPKS ALETCFYAPS  360
MRPEVATYNQ QQLMMPHVFS QMPPPEFTDF YHDINQHEMI NKKQRF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364470.0HM236447.1 Gossypium hirsutum MADS31 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488245.10.0PREDICTED: uncharacterized protein LOC105801522
TrEMBLA0A0D2PC460.0A0A0D2PC46_GOSRA; Uncharacterized protein
STRINGGorai.007G196600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16227914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-19M-type_MADS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]