PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G191800.1 | ||||||||
Common Name | B456_007G191800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 267aa MW: 29432.9 Da PI: 9.672 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 50.3 | 5.1e-16 | 196 | 246 | 4 | 54 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 ++r +r++kNRe+A rsR+RK+a++ eLe +v+ L +eN +Lk + e+l+ Gorai.007G191800.1 196 DRRHKRMIKNRESAARSRARKQAYTNELELEVAHLMEENARLKRQQEQLRV 246 689****************************************99999975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.7E-14 | 189 | 245 | No hit | No description |
SMART | SM00338 | 1.4E-13 | 193 | 257 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.369 | 195 | 245 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.3E-14 | 197 | 245 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 5.53E-30 | 197 | 251 | No hit | No description |
SuperFamily | SSF57959 | 1.0E-11 | 197 | 245 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 200 | 215 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MWTIFSMLGI GERRSDTCCL NTLSSVSSSS SSSSSSSSSS SSSPLSTPSH LHNQTHTPKT 60 MEEVWKEINL ASLHDNSSSR EGLNPHNPHF ILQDFLARPF SKDPPANRVS ANGDTTFLVS 120 PPPPPPATLL SLNSGPGFDF LDNSYPLRSK PRLQMQNNPI SDLPNMNCPF EALASPSGLA 180 CFDKKRFQDP DNNSGDRRHK RMIKNRESAA RSRARKQAYT NELELEVAHL MEENARLKRQ 240 QEQLRVAAAT PLSGKRTLQR TSTAPF* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in shoot apex. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980, ECO:0000269|PubMed:25661797}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ524434 | 3e-89 | HQ524434.1 Gossypium herbaceum clone NBRI_F034 simple sequence repeat marker, genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012487828.1 | 1e-159 | PREDICTED: protein FD, partial | ||||
Swissprot | Q84JK2 | 4e-65 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A0D2SGB4 | 0.0 | A0A0D2SGB4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G191800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 7e-62 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G191800.1 |