PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G188800.1

Common Name

B456_007G188800, LOC105803652

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 659aa MW: 74560 Da PI: 5.6262

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G188800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.8	3.4e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv++yLk+k++g+k++l e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd Gorai.007G188800.1 6 LPPGFRFHPTDEELVSYYLKRKINGRKIDL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKD 95 79**************************.99***********6434555777***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v s +++ vg+kktLv+y+grap+g++tdWvmheyrl Gorai.007G188800.1 96 RKVNS-QTRGVGVKKTLVYYRGRAPHGSRTDWVMHEYRL 133 *.8899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-63	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	61.403	6	157	IPR003441	NAC domain
Pfam	PF02365	2.4E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV SYYLKRKING RKIDLEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS QTRGVGVKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECES ASTGFNDAYA LCRVFKKSAT TTPKMIGEHY STTVNNQIQI 180 TSEQSNSSLD LYSEGRCEES SDFGKPVDAC SSSILNRSSS SIDDICDARD VKWMQCFSED 240 AFGLINPSFS TYATIPYAPS KVDVALECAR LQQQMSLPPL EVEDFSQVGV ANHKVMMRTA 300 PMRETQHETD ILEEILSVAH ASQQLINQDA WGGSSSSNGH DFTFMNTMYQ HQNQINDQMN 360 CPLYTNQSLE GSSTRSTMVQ GDRMVENLRW VGMSGKDFEQ YCFMQENKVV PIQHISSFTD 420 TGVQGESGHD YNSIAINDTG IKDNEIEDIS HGFTEGDHFL DEGNIDDLRS SPSYEVVEDI 480 KFNHGMLVST RQVANTCFHQ ALPSQTVKVH QNPITATSYL QFQVGKPEPD EARYNIEKSF 540 FRKLYSFTKG QCTESLSFMK WCKDTASGFL CMAMLLLMRT FYLEFEEDTI SERLVDIGLN 600 AKDSKKEKKG VAVFGYSLAK SNGRWNDFGL LMTILAFFLI ISLVMCTLLA SILIHSFL*

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV SYYLKRKING RKIDLEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS QTRGVGVKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECES ASTGFNDAYA LCRVFKKSAT TTPKMIGEHY STTVNNQIQI  180
TSEQSNSSLD LYSEGRCEES SDFGKPVDAC SSSILNRSSS SIDDICDARD VKWMQCFSED  240
AFGLINPSFS TYATIPYAPS KVDVALECAR LQQQMSLPPL EVEDFSQVGV ANHKVMMRTA  300
PMRETQHETD ILEEILSVAH ASQQLINQDA WGGSSSSNGH DFTFMNTMYQ HQNQINDQMN  360
CPLYTNQSLE GSSTRSTMVQ GDRMVENLRW VGMSGKDFEQ YCFMQENKVV PIQHISSFTD  420
TGVQGESGHD YNSIAINDTG IKDNEIEDIS HGFTEGDHFL DEGNIDDLRS SPSYEVVEDI  480
KFNHGMLVST RQVANTCFHQ ALPSQTVKVH QNPITATSYL QFQVGKPEPD EARYNIEKSF  540
FRKLYSFTKG QCTESLSFMK WCKDTASGFL CMAMLLLMRT FYLEFEEDTI SERLVDIGLN  600
AKDSKKEKKG VAVFGYSLAK SNGRWNDFGL LMTILAFFLI ISLVMCTLLA SILIHSFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-58	2	157	11	168	Stress-induced transcription factor NAC1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616414	1e-145	JX616414.1 Gossypium hirsutum clone NBRI_GE61056 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012491445.1	0.0	PREDICTED: NAC domain-containing protein 86-like
TrEMBL	A0A0D2QVJ7	0.0	A0A0D2QVJ7_GOSRA; Uncharacterized protein
STRING	Gorai.007G188800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10112	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-154	NAC domain containing protein 28

Link Out ? help Back to Top
Phytozome	Gorai.007G188800.1
Entrez Gene	105803652

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]