PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G179300.1
Common NameB456_007G179300, LOC105803556
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 259aa    MW: 29485.6 Da    PI: 8.0609
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G179300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.1e-174592148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+++Ed++l+d+++ +G g+W++ ++  g++R++k+c++rw +yl
  Gorai.007G179300.1 45 KGAWSKQEDQKLIDYIRIHGEGCWRSLPKAAGLHRCGKSCRLRWINYL 92
                        79********************************************97 PP
2Myb_DNA-binding51.13.2e-1698142147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
  Gorai.007G179300.1  98 RGNFAQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 142
                         89999*****************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-243695IPR009057Homeodomain-like
PROSITE profilePS5129417.8074092IPR017930Myb domain
SuperFamilySSF466891.64E-2842139IPR009057Homeodomain-like
SMARTSM007172.8E-144494IPR001005SANT/Myb domain
PfamPF002494.2E-154592IPR001005SANT/Myb domain
CDDcd001674.32E-114792No hitNo description
PROSITE profilePS5129426.33193147IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2596147IPR009057Homeodomain-like
SMARTSM007173.7E-1597145IPR001005SANT/Myb domain
PfamPF002491.5E-1498142IPR001005SANT/Myb domain
CDDcd001671.53E-10100143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MCFPMSPSSY FLSPWLVAQK VRESFTFDFE TPMRKPCCDK QGTNKGAWSK QEDQKLIDYI  60
RIHGEGCWRS LPKAAGLHRC GKSCRLRWIN YLRPDIKRGN FAQDEEDLII KLHALLGNRW  120
SLIAGRLPGR TDNEVKNYWN SHIKRKLMKM GIDPNNHKLN QYPHHVGPLN PTTTNSMDVA  180
CKLRVFSTEN DDGVSDAASY LEDETPPTGI SNLDLDLTIA FPSSPIKNII EESQKKTASI  240
VTNDEEEQYT VPTLLLFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28451477108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0341340.0AF034134.1 Gossypium hirsutum MYB-like DNA-binding domain protein (MYB6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491251.10.0PREDICTED: transcription repressor MYB6-like
SwissprotQ388513e-75MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A0D2QUZ70.0A0A0D2QUZ7_GOSRA; Uncharacterized protein
STRINGGorai.007G179300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-77myb domain protein 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]