PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G171900.1

Common Name

B456_007G171900, LOC105803473

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 521aa MW: 56190.4 Da PI: 4.7539

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G171900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.3	1e-30	251	309	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Gorai.007G171900.1 251 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 309 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.0E-34	235	311	IPR003657	WRKY domain
SuperFamily	SSF118290	7.06E-28	243	311	IPR003657	WRKY domain
PROSITE profile	PS50811	29.838	245	311	IPR003657	WRKY domain
SMART	SM00774	1.0E-36	250	310	IPR003657	WRKY domain
Pfam	PF03106	9.5E-27	252	309	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MDFFAQRSNK LVDDIDDEEV EEEEEEEEED DDDDGNLIHT SDSDIKDSAG RTKLQLNVNT 60 GLNLLTTNTS SDISNDGIHC NTEDKRAKDE VAVLQAEVER MNTENQRLRE MLSQVTSNYN 120 TVQMHLVTLM QQPPDAKAEE QDLMKQIKKS NGGLMVLSPR QLMDLRLPAV DIDEPSLSSS 180 DHSGSEIVSK GFGLRKRDSS EDSLDQGSQA QGWVANKVPR FNSSKNVDQT EATMRKARVS 240 VRARSEATMI TDGCQWRKYG QKMAKGNPCP RAYYRCTMAA GCPVRKQVQR CAEDRTILIT 300 TYEGNHNHPL PPAAMAMAST TSSAARMLLS GSMSSADGLM NSNFLTRTIL PCSSSMATIS 360 ASAPFPTVTL DLTQTPNPLQ FPRLTPGQFQ VPFPNPPQNL ANSPAAALLP QIFGQAVHTQ 420 SKFSGLQMSG DVGHQQLQIS LAETVNAATA AIAADPNFTA ALAAAITSII GSSQPNNAAV 480 PNDNAATANL TSVTNSSANN ATTTSNSNNK ITNNSNFTAN *

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MDFFAQRSNK LVDDIDDEEV EEEEEEEEED DDDDGNLIHT SDSDIKDSAG RTKLQLNVNT  60
GLNLLTTNTS SDISNDGIHC NTEDKRAKDE VAVLQAEVER MNTENQRLRE MLSQVTSNYN  120
TVQMHLVTLM QQPPDAKAEE QDLMKQIKKS NGGLMVLSPR QLMDLRLPAV DIDEPSLSSS  180
DHSGSEIVSK GFGLRKRDSS EDSLDQGSQA QGWVANKVPR FNSSKNVDQT EATMRKARVS  240
VRARSEATMI TDGCQWRKYG QKMAKGNPCP RAYYRCTMAA GCPVRKQVQR CAEDRTILIT  300
TYEGNHNHPL PPAAMAMAST TSSAARMLLS GSMSSADGLM NSNFLTRTIL PCSSSMATIS  360
ASAPFPTVTL DLTQTPNPLQ FPRLTPGQFQ VPFPNPPQNL ANSPAAALLP QIFGQAVHTQ  420
SKFSGLQMSG DVGHQQLQIS LAETVNAATA AIAADPNFTA ALAAAITSII GSSQPNNAAV  480
PNDNAATANL TSVTNSSANN ATTTSNSNNK ITNNSNFTAN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-24	237	313	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269\|PubMed:25733771}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012491141.1	0.0	PREDICTED: probable WRKY transcription factor 31
Swissprot	Q9XEC3	1e-127	WRK42_ARATH; WRKY transcription factor 42
TrEMBL	A0A0D2TGP0	0.0	A0A0D2TGP0_GOSRA; Uncharacterized protein
STRING	Gorai.007G171900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1057	28	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-96	WRKY family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G171900.1
Entrez Gene	105803473

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]