PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G164600.4 | ||||||||
Common Name | B456_007G164600, LOC105803395 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CO-like | ||||||||
Protein Properties | Length: 414aa MW: 44857.6 Da PI: 4.826 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19 | 2.9e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ Gorai.007G164600.4 4 ICDFCGDQPSLVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 7*****************************65677777765 PP | |||||||
2 | zf-B_box | 20.4 | 1.1e-06 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C++++++++ C + ++ lC++C +H H++++ Gorai.007G164600.4 46 LLCERCNSQPAFVRCAEEKVSLCQNCDWMGHDAstsnstHKRQT 89 57*****************************4477788888766 PP | |||||||
3 | CCT | 62.9 | 9.7e-22 | 356 | 399 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ Gorai.007G164600.4 356 RSDAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 399 889**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.271 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.40E-8 | 4 | 47 | No hit | No description |
SMART | SM00336 | 2.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.816 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.38E-4 | 47 | 90 | No hit | No description |
SMART | SM00336 | 1.1 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.0E-16 | 356 | 398 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.418 | 356 | 398 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MGYICDFCGD QPSLVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC 60 AEEKVSLCQN CDWMGHDAST SNSTHKRQTI NSYSGCPSSG ELSSIWSFFS QSDSAGESAC 120 EQELGLMSIS ENIESTSWDP TVNTISHNSA GVAEVNGDCN VDKGSGWTRT SIPEHRPAPQ 180 LLDQPAGSTD TSLPKFCPQT KYPGLSEDDL YDDFNIDEVD LNLENYEELF GVTLNHSEEL 240 LENGGIDSLF GTKDMSAADS TCQGAVAAEG SSIGLVNAIQ PACSNAASAD SVMSNKTDSI 300 LYFTTKHAHS SLSFSGLTGE SSAGDYQDCG ASSMLLMGEP PWCPPCTESS IPSATRSDAV 360 MRYKEKKKTR KFEKRVRYAS RKARADVRKR VKGRFVKAGD AYDYDPLNQT RSC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012491005.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Swissprot | Q9SSE5 | 1e-147 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A0D2SEH7 | 0.0 | A0A0D2SEH7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G164600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-117 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G164600.4 |
Entrez Gene | 105803395 |
Publications ? help Back to Top | |||
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