PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G164600.1
Common NameB456_007G164600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 422aa    MW: 45821.6 Da    PI: 4.7689
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G164600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.6e-06444539
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        +C+ +++++   +C+++  +lC +C  + H+       H++
  Gorai.007G164600.1  4 ICDFCGDQPSLVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                        7*****************************65677777765 PP
2zf-B_box20.31.2e-064689441
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                          C++++++++   C + ++ lC++C   +H        H++++
  Gorai.007G164600.1 46 LLCERCNSQPAFVRCAEEKVSLCQNCDWMGHDAstsnstHKRQT 89
                        57*****************************4477788888766 PP
3CCT48.92.4e-17356407144
                 CCT   1 ReaallRYkeKrktRk........FeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R  a++RYkeK+ktR+        FeK++rY+sRKa+A+ R+RvKGrFvk+ 
  Gorai.007G164600.1 356 RSDAVMRYKEKKKTRNfilvaydrFEKRVRYASRKARADVRKRVKGRFVKAG 407
                         889************83333333369***********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.271147IPR000315B-box-type zinc finger
CDDcd000213.02E-8447No hitNo description
SMARTSM003362.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8164390IPR000315B-box-type zinc finger
CDDcd000211.25E-44790No hitNo description
SMARTSM003361.14890IPR000315B-box-type zinc finger
PfamPF062033.9E-15356406IPR010402CCT domain
PROSITE profilePS5101710.893364406IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MGYICDFCGD QPSLVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC  60
AEEKVSLCQN CDWMGHDAST SNSTHKRQTI NSYSGCPSSG ELSSIWSFFS QSDSAGESAC  120
EQELGLMSIS ENIESTSWDP TVNTISHNSA GVAEVNGDCN VDKGSGWTRT SIPEHRPAPQ  180
LLDQPAGSTD TSLPKFCPQT KYPGLSEDDL YDDFNIDEVD LNLENYEELF GVTLNHSEEL  240
LENGGIDSLF GTKDMSAADS TCQGAVAAEG SSIGLVNAIQ PACSNAASAD SVMSNKTDSI  300
LYFTTKHAHS SLSFSGLTGE SSAGDYQDCG ASSMLLMGEP PWCPPCTESS IPSATRSDAV  360
MRYKEKKKTR NFILVAYDRF EKRVRYASRK ARADVRKRVK GRFVKAGDAY DYDPLNQTRS  420
C*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491005.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1
SwissprotQ9SSE51e-144COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0D2SL920.0A0A0D2SL92_GOSRA; Uncharacterized protein
STRINGGorai.007G164600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-127B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]