PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G162700.1

Common Name

B456_007G162700, LOC105803371

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1138aa MW: 128475 Da PI: 7.4054

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G162700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.4	4.2e-12	5	53	8	56
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ql eLe ++ n+yp+++e+e A++lgLt +qV+ WF +R ++k Gorai.007G162700.1 5 SQFQLIELEYIYKDNKYPTQKEIEGYAASLGLTLKQVQQWFASKRKRDK 53 789******************************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.216	1	55	IPR001356	Homeobox domain
SMART	SM00389	3.8E-7	1	59	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-10	3	53	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.02E-11	3	58	IPR009057	Homeodomain-like
CDD	cd00086	6.03E-12	3	53	No hit	No description
Pfam	PF00046	2.4E-9	5	53	IPR001356	Homeobox domain
SMART	SM00571	2.0E-8	360	419	IPR018501	DDT domain
PROSITE profile	PS50827	12.185	360	419	IPR018501	DDT domain
Pfam	PF02791	1.0E-9	361	416	IPR018501	DDT domain
Pfam	PF15612	1.6E-9	636	676	IPR028942	WHIM1 domain
Pfam	PF15613	2.3E-12	769	842	IPR028941	WHIM2 domain
Gene3D	G3DSA:3.90.10.10	4.9E-4	929	1003	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1138 aa Download sequence Send to blast
MKRKSQFQLI ELEYIYKDNK YPTQKEIEGY AASLGLTLKQ VQQWFASKRK RDKGTILPIH 60 SMRSLSASTK MNAAAISVAR KNQKSTSSVG ANGFGKKKKK MLLPQDFFSP QYILSKVFRK 120 DGPPLGVEFD SLPSQTFHCK GSKESHPADE ECQRAAAKKR KVFELTSIDH QNNSNESASV 180 KKHGMGKGLM TVWRVVNPEG GDIPTGIDIS NRQIVAPSQT SPVVRRQPPQ NKRRQPLVSQ 240 MKQRSLEKKL QEKKRASIKR REVQSNKNDN QRQPRNEKCE LALDGTISNE RLDQLAMLVD 300 DEELELRELQ AGPNPLTCAD HLGSSGLLGC SLCKDLLAKF PPDSVKMKQP FSMQPWDSSP 360 ETVKKLFKVF HFLYTYSVTL DTCSFTLDEF AQAFHDKDSL LLGKIHVALL KLLLSDVEVE 420 LSGAVLPHFS LSCKFLALLH SVENQEFVVE VWKTSLNPLT WTEILRQVLV AAGFGSKQGL 480 LRREALNKEM SLMVRFGLRP GSLKSELFKI LSERGNNGLK VSDLALSLPV TELNLTSTTE 540 ELEELICSTL SSDITLFEKI SPSAYRLRCS SVAKDSNNCH SDTEDSGSVD DDSDDSSDDS 600 DHDPGNYYQR KFKHNNHHKG RNNMLTVHTE IDESHPGEVW LLGLMEGEYS DLSIEEKLNA 660 LVALIDLLSD GSSIRMENPG KAIVEYVPSI PYYGSGAKIK RSSSNRQNFP RPSWVYGGQR 720 NGVQVSHTSS DSRPVDSSAI TKSFEKERCS SSGQDAKQTE VGVYIHPMQS IFLGSDRRYN 780 RYWLFLGPCN AYDPGHRRIY FESSEDGHWE VIDTEEALRA LLAVLDDRGK REALLIESLE 840 KRGTSLCQEM SSRHLHDAEI RHTPSYSPEM DAVREDSCSP VSDVDNLSLT VAMNESLTSC 900 GAIVLHAGKK GEEQNRMWRS LQEFDVWIWD CFYLNLNAVK HNKRSYLDSL TRCESCHDLY 960 WRDEKHCRIC HKTFEIDFDL EERYAIHVAT CREKGDNNTF PKFKVLPSQL QSLKAAVHAI 1020 ESFMPKDALV GAWTKSAHRL WVKRLRRTSS LSELLQVIAD FVAAINENWL NQCHIEQGGC 1080 TVIEEIIAFF PTMPQTSSAL ALWLVKLDEF IASYLKKIHS EKELENGSRS DIRAAKE*

Sequence ? help Back to Top

Protein Sequence Length: 1138 aa Download sequence Send to blast

MKRKSQFQLI ELEYIYKDNK YPTQKEIEGY AASLGLTLKQ VQQWFASKRK RDKGTILPIH  60
SMRSLSASTK MNAAAISVAR KNQKSTSSVG ANGFGKKKKK MLLPQDFFSP QYILSKVFRK  120
DGPPLGVEFD SLPSQTFHCK GSKESHPADE ECQRAAAKKR KVFELTSIDH QNNSNESASV  180
KKHGMGKGLM TVWRVVNPEG GDIPTGIDIS NRQIVAPSQT SPVVRRQPPQ NKRRQPLVSQ  240
MKQRSLEKKL QEKKRASIKR REVQSNKNDN QRQPRNEKCE LALDGTISNE RLDQLAMLVD  300
DEELELRELQ AGPNPLTCAD HLGSSGLLGC SLCKDLLAKF PPDSVKMKQP FSMQPWDSSP  360
ETVKKLFKVF HFLYTYSVTL DTCSFTLDEF AQAFHDKDSL LLGKIHVALL KLLLSDVEVE  420
LSGAVLPHFS LSCKFLALLH SVENQEFVVE VWKTSLNPLT WTEILRQVLV AAGFGSKQGL  480
LRREALNKEM SLMVRFGLRP GSLKSELFKI LSERGNNGLK VSDLALSLPV TELNLTSTTE  540
ELEELICSTL SSDITLFEKI SPSAYRLRCS SVAKDSNNCH SDTEDSGSVD DDSDDSSDDS  600
DHDPGNYYQR KFKHNNHHKG RNNMLTVHTE IDESHPGEVW LLGLMEGEYS DLSIEEKLNA  660
LVALIDLLSD GSSIRMENPG KAIVEYVPSI PYYGSGAKIK RSSSNRQNFP RPSWVYGGQR  720
NGVQVSHTSS DSRPVDSSAI TKSFEKERCS SSGQDAKQTE VGVYIHPMQS IFLGSDRRYN  780
RYWLFLGPCN AYDPGHRRIY FESSEDGHWE VIDTEEALRA LLAVLDDRGK REALLIESLE  840
KRGTSLCQEM SSRHLHDAEI RHTPSYSPEM DAVREDSCSP VSDVDNLSLT VAMNESLTSC  900
GAIVLHAGKK GEEQNRMWRS LQEFDVWIWD CFYLNLNAVK HNKRSYLDSL TRCESCHDLY  960
WRDEKHCRIC HKTFEIDFDL EERYAIHVAT CREKGDNNTF PKFKVLPSQL QSLKAAVHAI  1020
ESFMPKDALV GAWTKSAHRL WVKRLRRTSS LSELLQVIAD FVAAINENWL NQCHIEQGGC  1080
TVIEEIIAFF PTMPQTSSAL ALWLVKLDEF IASYLKKIHS EKELENGSRS DIRAAKE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	100	GKKKKKM
2	152	160	QRAAAKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250\|UniProtKB:F4HY56}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012490967.1	0.0	PREDICTED: uncharacterized protein LOC105803371 isoform X1
Refseq	XP_012490968.1	0.0	PREDICTED: uncharacterized protein LOC105803371 isoform X1
Refseq	XP_012490969.1	0.0	PREDICTED: uncharacterized protein LOC105803371 isoform X1
Refseq	XP_012490970.1	0.0	PREDICTED: uncharacterized protein LOC105803371 isoform X1
Swissprot	F4JRF5	0.0	RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBL	A0A0D2PA81	0.0	A0A0D2PA81_GOSRA; Uncharacterized protein
STRING	Gorai.007G162700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9638	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Gorai.007G162700.1
Entrez Gene	105803371

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]