PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G151900.2
Common NameB456_007G151900, LOC105803263
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 550aa    MW: 60025.4 Da    PI: 7.0703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G151900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.41.6e-15358404455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P +      K +Ka++L  A++Y+ksLq
  Gorai.007G151900.2 358 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDDAIDYLKSLQ 404
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-20352420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.987354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.57E-16357408No hitNo description
Gene3DG3DSA:4.10.280.104.3E-21358412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-13358404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-17360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MNHCVPDFKM EDDYAIFLSP SSLTRVEKPP SRPEDEIMEL LWQNGQVVMQ SQNQRSMKKL  60
PSFKLLDADH SAPREIRSSS PSHKHRRHHH QEQQQLLTDH LFMQEDEMAS WLHYPISDAN  120
FDHDFCTDLL YPPSSSPTAA VAPCMSSTVA TSTPPILKRV SQVSVSASAK ESVPRPPVPP  180
ARRNELEPAR IHNFSHFSRH ITARTEQSEL SNSKNVMGES TVVDSSNTPA AAPESRAAQV  240
MPSNTEAASG GNNNNNNNAN ANMSAAGVPY LQSADVRLGA NKDSLATCEV TVTSSPGGSS  300
ASAEPTAQKA ASAEDRKRKG RELDEAECHS ENAEFESADT KKQTRGSTSA KRSRAAEVHN  360
LSERRRRDRI NEKMRALQEL IPRCNKSDKA SMLDDAIDYL KSLQMQVQMM SMGCGMVPMF  420
PGVQQYISPM GIGMSMGMDM GIIRPMMSFP NVVAGSALPT SAAAAHLGPR IPMPAFHMPP  480
SVPAPDPSGF QPSNQSDPIP NPLVMQNLNQ AQQYIGLHQT MQIPHPQGQA MAQPSSRRGA  540
EKVENHPTG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1362367ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6161970.0JX616197.1 Gossypium hirsutum clone NBRI_GE60666 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490791.10.0PREDICTED: transcription factor PIF1-like isoform X1
TrEMBLA0A0D2SKE30.0A0A0D2SKE3_GOSRA; Uncharacterized protein
STRINGGorai.007G151900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.33e-59phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]