PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G149100.5
Common NameB456_007G149100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 363aa    MW: 39695.4 Da    PI: 6.2378
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G149100.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like110.21.1e-34252306155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr+rWtpeLHe+Fveav+qLGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+
  Gorai.007G149100.5 252 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVDGLTIYHVKSHLQKYRT 306
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.873249309IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-32250308IPR009057Homeodomain-like
SuperFamilySSF466891.77E-18250306IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-25252306IPR006447Myb domain, plants
PfamPF002493.0E-10254305IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0016036Biological Processcellular response to phosphate starvation
GO:0055063Biological Processsulfate ion homeostasis
GO:0071486Biological Processcellular response to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEARPALSIQ RSGASQLSSL GVSGGLSSSL SIPSTHLEGT YQKLPDIQQV PSERELTTRP  60
QAHATRVPTN NGVVGHIFSS SSGFSSDLHY SSVLPNEKHS RNSPFISQSL ADTASLPLSQ  120
SSSSLLPQPT IPSCCNKENS GSWCTDPDFL DFPVSTPVQS GQVENIQRSE DFSKQNDWQE  180
WADQLITCDD ALTSNWNELL VDNVTNLEPK MACQVAKPCT TMPAQNQQLP SPSVESLRVV  240
NPSSSANNAP AKPRMRWTPE LHEAFVEAVN QLGGSERATP KGVLKLMKVD GLTIYHVKSH  300
LQKYRTARYR PESSEGCSNL SEWMDGSLRL ERRMVHLVLI NEVEMTFFSP SGLTGSRISA  360
VW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-34251310160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-34251310160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-34251310160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-34251310160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-34251310160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-34251310160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-34251310160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-34251310160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490737.10.0PREDICTED: protein PHR1-LIKE 1
RefseqXP_012490738.10.0PREDICTED: protein PHR1-LIKE 1
TrEMBLA0A0D2P9970.0A0A0D2P997_GOSRA; Uncharacterized protein
STRINGGorai.007G149100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.14e-54phosphate starvation response 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]