PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G145700.1
Common NameB456_007G145700, LOC105803198
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 128aa    MW: 14317.8 Da    PI: 9.0883
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G145700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-201869256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+G+r+++ +g+++AeIrdp+ ng  +r +lg++ taeeAa+a+++a+ +l+g+
  Gorai.007G145700.1 18 RYRGIRRRP-WGKFAAEIRDPTRNG--ARLWLGTYETAEEAARAYDRAAFALRGH 69
                        6********.**********98887..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.17E-301877No hitNo description
SMARTSM003803.8E-361882IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-231877IPR016177DNA-binding domain
PROSITE profilePS5103225.081876IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-321877IPR001471AP2/ERF domain
PfamPF008471.2E-141869IPR001471AP2/ERF domain
PRINTSPR003672.9E-111930IPR001471AP2/ERF domain
PRINTSPR003672.9E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MEAPQGGKKS GNINAEVRYR GIRRRPWGKF AAEIRDPTRN GARLWLGTYE TAEEAARAYD  60
RAAFALRGHS AILNFPNEHQ YQNSTFPPSS SSASSSATAR RTEVIEFECL DNKLLEDLLE  120
TQEKQRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-3051143114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2220150.0KC222015.1 Gossypium hirsutum cultivar Zhongmiansuo 12 ethylene-responsive transcription factor (ERF) mRNA, complete cds.
GenBankKP7802040.0KP780204.1 Gossypium hirsutum C-repeat binding factor 21 (CBF21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490690.14e-90PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-43ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0D2P0999e-89A0A0D2P099_GOSRA; Uncharacterized protein
STRINGGorai.007G145700.12e-89(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.16e-30ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]