PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G130500.1
Common NameB456_007G130500, LOC105803045
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 473aa    MW: 51039.1 Da    PI: 8.4552
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G130500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-114975127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++ + C +++rtG+C yG+rC+++H++
  Gorai.007G130500.1 49 PGVPDCVYYMRTGFCGYGNRCRYNHPR 75
                        57899********************96 PP

2zf-CCCH39.59.3e-1394120127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C+f+++tGtCk+G++CkF+H++
  Gorai.007G130500.1  94 PGEPTCQFYLKTGTCKFGASCKFHHPK 120
                         57899********************96 PP

3zf-CCCH27.74.6e-09141166227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++++tG+Ck+  +CkF+H++
  Gorai.007G130500.1 141 GEKECSYYLKTGHCKFDTTCKFHHPQ 166
                         7899********************97 PP

4zf-CCCH36.58.2e-12294320127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++++rtG Ck+G++C+++H++
  Gorai.007G130500.1 294 PGEPECQYYLRTGDCKFGSSCRYHHPR 320
                         5799*********************96 PP

5zf-CCCH33.95.4e-11343365426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          +C+f++++G Ck+G++CkF H+
  Gorai.007G130500.1 343 QPCSFYLQNGRCKFGSTCKFDHP 365
                         59********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3144876IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-74875IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-85075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-65376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-45474IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-693120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.02393121IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-1095120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-697120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-499119IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042139167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6141167IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-6141166IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6293320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817293321IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9295320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6297324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4299320IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5339366IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.962339367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6342370IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5343365IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-8344365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MELYSRIPPR NGSQSGYQSE WSPAGPETGL EESMWQLSLG GTESYPERPG VPDCVYYMRT  60
GFCGYGNRCR YNHPRNPAWV EAAVRATGVY PERPGEPTCQ FYLKTGTCKF GASCKFHHPK  120
QGDQSFSQVP LNIYGYPLRP GEKECSYYLK TGHCKFDTTC KFHHPQPAGT SIPASAPQFY  180
QPVQSPSVPI TEQYGGTSTS ARPPILPGSY VQGAYGPVLF SPGVVPIPGW SHYSAPVSSV  240
LCPGVQPAVG ATSLYGLTQL SSSTPSHAGP YLSLPSSMSP SSGNQNNQTF PERPGEPECQ  300
YYLRTGDCKF GSSCRYHHPR DKVAPWTNCI LSPMGLPLRS GGQPCSFYLQ NGRCKFGSTC  360
KFDHPIGTMR YSPSLSSLID MPVAPYPVGS LLATLPPSST SSELRPELSS GSKKDSYLSR  420
IPSSSTSSSS VGLIFSQTGS VPLSDLQHSS QNSVPLSSTR STRQGGEVHR SN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4451568e-54AM445156.2 Vitis vinifera contig VV78X067066.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490447.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X4
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0D2QRW40.0A0A0D2QRW4_GOSRA; Uncharacterized protein
STRINGGorai.007G130500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]