PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G130500.1 | ||||||||
Common Name | B456_007G130500, LOC105803045 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 473aa MW: 51039.1 Da PI: 8.4552 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.4 | 1.8e-11 | 49 | 75 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ + C +++rtG+C yG+rC+++H++ Gorai.007G130500.1 49 PGVPDCVYYMRTGFCGYGNRCRYNHPR 75 57899********************96 PP | |||||||
2 | zf-CCCH | 39.5 | 9.3e-13 | 94 | 120 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tGtCk+G++CkF+H++ Gorai.007G130500.1 94 PGEPTCQFYLKTGTCKFGASCKFHHPK 120 57899********************96 PP | |||||||
3 | zf-CCCH | 27.7 | 4.6e-09 | 141 | 166 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+ +CkF+H++ Gorai.007G130500.1 141 GEKECSYYLKTGHCKFDTTCKFHHPQ 166 7899********************97 PP | |||||||
4 | zf-CCCH | 36.5 | 8.2e-12 | 294 | 320 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ Gorai.007G130500.1 294 PGEPECQYYLRTGDCKFGSSCRYHHPR 320 5799*********************96 PP | |||||||
5 | zf-CCCH | 33.9 | 5.4e-11 | 343 | 365 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+f++++G Ck+G++CkF H+ Gorai.007G130500.1 343 QPCSFYLQNGRCKFGSTCKFDHP 365 59********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.314 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-7 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-8 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 53 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 54 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-6 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.023 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-10 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-6 | 97 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 99 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0011 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.042 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-6 | 141 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-6 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.0E-6 | 293 | 320 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.817 | 293 | 321 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-9 | 295 | 320 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 297 | 324 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 299 | 320 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-5 | 339 | 366 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.962 | 339 | 367 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-6 | 342 | 370 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-5 | 343 | 365 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-8 | 344 | 365 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MELYSRIPPR NGSQSGYQSE WSPAGPETGL EESMWQLSLG GTESYPERPG VPDCVYYMRT 60 GFCGYGNRCR YNHPRNPAWV EAAVRATGVY PERPGEPTCQ FYLKTGTCKF GASCKFHHPK 120 QGDQSFSQVP LNIYGYPLRP GEKECSYYLK TGHCKFDTTC KFHHPQPAGT SIPASAPQFY 180 QPVQSPSVPI TEQYGGTSTS ARPPILPGSY VQGAYGPVLF SPGVVPIPGW SHYSAPVSSV 240 LCPGVQPAVG ATSLYGLTQL SSSTPSHAGP YLSLPSSMSP SSGNQNNQTF PERPGEPECQ 300 YYLRTGDCKF GSSCRYHHPR DKVAPWTNCI LSPMGLPLRS GGQPCSFYLQ NGRCKFGSTC 360 KFDHPIGTMR YSPSLSSLID MPVAPYPVGS LLATLPPSST SSELRPELSS GSKKDSYLSR 420 IPSSSTSSSS VGLIFSQTGS VPLSDLQHSS QNSVPLSSTR STRQGGEVHR SN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM445156 | 8e-54 | AM445156.2 Vitis vinifera contig VV78X067066.11, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012490447.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X4 | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A0D2QRW4 | 0.0 | A0A0D2QRW4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G130500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5912 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G130500.1 |
Entrez Gene | 105803045 |
Publications ? help Back to Top | |||
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