PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G129900.1 | ||||||||
Common Name | B456_007G129900, LOC105803035 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YB | ||||||||
Protein Properties | Length: 167aa MW: 18680.8 Da PI: 6.5172 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 172 | 6.6e-54 | 32 | 127 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 +eqdr+lPianv+rimk++lP nak+sk+aket+qecvsefisfvt+easdkc+rekrkt+ngdd++walatlGf++y+e+lk yl++yre Gorai.007G129900.1 32 KEQDRLLPIANVGRIMKQILPPNAKVSKEAKETLQECVSEFISFVTGEASDKCHREKRKTVNGDDICWALATLGFDNYAEQLKRYLQRYRE 122 89***************************************************************************************** PP NF-YB 93 legek 97 ege+ Gorai.007G129900.1 123 QEGER 127 **997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.4E-53 | 28 | 144 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.99E-39 | 34 | 142 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.6E-27 | 37 | 101 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.1E-20 | 65 | 83 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 68 | 84 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 3.1E-20 | 84 | 102 | No hit | No description |
PRINTS | PR00615 | 3.1E-20 | 103 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MTDKIGIDSY REGHKYDFGG GGGGSGEDGF IKEQDRLLPI ANVGRIMKQI LPPNAKVSKE 60 AKETLQECVS EFISFVTGEA SDKCHREKRK TVNGDDICWA LATLGFDNYA EQLKRYLQRY 120 REQEGERANQ HSAGNVPEGK EETSTYRGEL HSSLSLGRFE RCKSIW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 1e-44 | 31 | 122 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 1e-44 | 31 | 122 | 1 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012490426.1 | 1e-122 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Swissprot | O82248 | 7e-61 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A0D2TE45 | 1e-120 | A0A0D2TE45_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G129900.1 | 1e-121 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM255 | 28 | 229 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 4e-63 | nuclear factor Y, subunit B5 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G129900.1 |
Entrez Gene | 105803035 |
Publications ? help Back to Top | |||
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