PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G121000.1 | ||||||||
Common Name | B456_007G121000, LOC105802932 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 33557.2 Da PI: 5.9952 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.5 | 3.6e-19 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd l +v+ +G g+W+++ar g++Rt+k+c++rw++y+ Gorai.007G121000.1 23 KGPWTEEEDSMLRAYVNIHGEGRWNAVARLSGLRRTGKSCRLRWLNYM 70 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.6e-16 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ + eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Gorai.007G121000.1 76 RGNISLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119 78899*****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.698 | 18 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-31 | 20 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-16 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-17 | 23 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-23 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.44E-11 | 25 | 70 | No hit | No description |
SMART | SM00717 | 1.2E-14 | 75 | 123 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.479 | 75 | 125 | IPR017930 | Myb domain |
Pfam | PF00249 | 9.5E-15 | 76 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-22 | 78 | 124 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MDVYKRGFIS ETSRSEEEME LRKGPWTEEE DSMLRAYVNI HGEGRWNAVA RLSGLRRTGK 60 SCRLRWLNYM RPEIKRGNIS LEEQLLILEL HSRWGNRWSK IAQHLPGRTD NEIKNYWRTR 120 VQKQAKQLNC DVNSKQFKDA MRYVWIPRLV ERIRASSESP SSQPSTTTNT TYNDRISNIS 180 SSQMSYANAS GSVQVDPSLL PELSGTSSDS LDTQVSSVSD LTDCYNPQSL SNYLHKGLGL 240 EKEGAATWGR DEEFQATEEH SNGWLVGGGE SSMDTVWNEE NVWFLQQQLH DGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-26 | 20 | 125 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF034133 | 0.0 | AF034133.1 Gossypium hirsutum MYB-like DNA-binding domain protein (MYB5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313996.2 | 0.0 | transcription factor MYB108-like | ||||
Refseq | XP_012490294.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q2QZJ8 | 2e-80 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A0D2SIH2 | 0.0 | A0A0D2SIH2_GOSRA; Uncharacterized protein | ||||
TrEMBL | Q94JN5 | 0.0 | Q94JN5_GOSHI; Myb-like transcription factor Myb 5 | ||||
STRING | Gorai.007G121000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 9e-78 | myb domain protein 78 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G121000.1 |
Entrez Gene | 105802932 |