PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G116100.1

Common Name

B456_007G116100, LOC105802880

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 986aa MW: 109022 Da PI: 6.4291

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G116100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.2	1.8e-41	154	231	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adl++ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l+efD++krsCrrrLa+hn+rrrk+++ Gorai.007G116100.1 154 VCQVEDCGADLTNAKDYHRRHKVCEMHSKASKALVGNVMQRFCQQCSRFHVLQEFDDGKRSCRRRLAGHNKRRRKTNP 231 6**************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.6E-34	148	216	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.129	152	229	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.22E-38	153	234	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.3E-30	155	228	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	2.6E-5	727	872	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.73E-6	756	870	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.83E-6	758	869	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 986 aa Download sequence Send to blast
MEARFGSEAH HFYGMSPADL RAVGKRTVEW DLNDWKWDGD LFIASSINPM SADTMGRQFF 60 PLGSGIPGNS SNSSSSCSDE LNPKAQKGKR ELGKKRRVTV VEDDSLNEET GSLTLKLGGQ 120 GDHGYPISQG EMKNWEGTSG KKTKLNGGSG NRAVCQVEDC GADLTNAKDY HRRHKVCEMH 180 SKASKALVGN VMQRFCQQCS RFHVLQEFDD GKRSCRRRLA GHNKRRRKTN PATVVNGNSL 240 NDEQTSGYLL LSLLKILSNM HSNRSDQTTD QDVLPQLLQS LANHTDEQGG RNISGLLPEP 300 KGSEAGSALF LNGEGPPRPF RQHITEAASE MPQKGVHSHD ARVTNVQGNA AGSVKMNNFD 360 LNDTYIDSDD GADDIEGFPA PLNMGTSSLD CPSWVQQDSH QSSPPQTSGN SDSVSAQSPS 420 SSSGDTQSRT DRIVFKLFGK EPNDFPLLLR AQILDWLSHS PTDIESYIRP GCIVLTIYLC 480 QSKAAWDELC CDLSFSLNRL LDCSDDTFWR TGWICTRVQD QIAFIYKGQV VVDTSLPLGS 540 NHSSKIMSVK PIALCATERA KFSVKGVNLS QPATRLLCAV EGKYLVQEAT HELMDSHDEF 600 KAQDELQYLN FSCSIPTVTG RGFIEIEDDG YNSSFFPFIV AEDDVCSEIR MLESLLEITD 660 AEAAVDRTGK MEAKNQAMDF IHEVGWLLHR SQLKSRLGHL DPNSEPFSLR RFKWLMEFSM 720 DHEWCAVVKK LLNVLLDGVV GSGEHPSLNL ALTEMGLLHR AVRKNCRPLV ELFLRFIPEK 780 GSSRLGLENE MVAGGIHESF LFRPDALGPS GLTPLHIAAG KDDSEDVLDA LTDDPGKVGI 840 GAWKSARDST GSTPEDYARL RGHYSYIHLV QKKINKRHSE HVVVDVPGPL SDCSTNRKQN 900 NESTSSFEIG QLELRSMKRH CKLCDQKLAY GYGTASRSLA YRPAMLSMVA IAAVCVCVAL 960 LFKSCPEVLY VFRPFRWELL DYGTS*

Sequence ? help Back to Top

Protein Sequence Length: 986 aa Download sequence Send to blast

MEARFGSEAH HFYGMSPADL RAVGKRTVEW DLNDWKWDGD LFIASSINPM SADTMGRQFF  60
PLGSGIPGNS SNSSSSCSDE LNPKAQKGKR ELGKKRRVTV VEDDSLNEET GSLTLKLGGQ  120
GDHGYPISQG EMKNWEGTSG KKTKLNGGSG NRAVCQVEDC GADLTNAKDY HRRHKVCEMH  180
SKASKALVGN VMQRFCQQCS RFHVLQEFDD GKRSCRRRLA GHNKRRRKTN PATVVNGNSL  240
NDEQTSGYLL LSLLKILSNM HSNRSDQTTD QDVLPQLLQS LANHTDEQGG RNISGLLPEP  300
KGSEAGSALF LNGEGPPRPF RQHITEAASE MPQKGVHSHD ARVTNVQGNA AGSVKMNNFD  360
LNDTYIDSDD GADDIEGFPA PLNMGTSSLD CPSWVQQDSH QSSPPQTSGN SDSVSAQSPS  420
SSSGDTQSRT DRIVFKLFGK EPNDFPLLLR AQILDWLSHS PTDIESYIRP GCIVLTIYLC  480
QSKAAWDELC CDLSFSLNRL LDCSDDTFWR TGWICTRVQD QIAFIYKGQV VVDTSLPLGS  540
NHSSKIMSVK PIALCATERA KFSVKGVNLS QPATRLLCAV EGKYLVQEAT HELMDSHDEF  600
KAQDELQYLN FSCSIPTVTG RGFIEIEDDG YNSSFFPFIV AEDDVCSEIR MLESLLEITD  660
AEAAVDRTGK MEAKNQAMDF IHEVGWLLHR SQLKSRLGHL DPNSEPFSLR RFKWLMEFSM  720
DHEWCAVVKK LLNVLLDGVV GSGEHPSLNL ALTEMGLLHR AVRKNCRPLV ELFLRFIPEK  780
GSSRLGLENE MVAGGIHESF LFRPDALGPS GLTPLHIAAG KDDSEDVLDA LTDDPGKVGI  840
GAWKSARDST GSTPEDYARL RGHYSYIHLV QKKINKRHSE HVVVDVPGPL SDCSTNRKQN  900
NESTSSFEIG QLELRSMKRH CKLCDQKLAY GYGTASRSLA YRPAMLSMVA IAAVCVCVAL  960
LFKSCPEVLY VFRPFRWELL DYGTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-31	146	228	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269\|PubMed:10524240}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622325	0.0	KJ622325.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL17) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012490238.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A0D2P7I5	0.0	A0A0D2P7I5_GOSRA; Uncharacterized protein
STRING	Gorai.007G116100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3030	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	Gorai.007G116100.1
Entrez Gene	105802880

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]