PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G114200.1
Common NameB456_007G114200, LOC105802860
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 422aa    MW: 47771.1 Da    PI: 9.1365
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G114200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.91.8e-32132236199
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                         f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g
  Gorai.007G114200.1 132 FDKVVTPSDVGKLNRLVIPKQHAEKYfplhSSTNEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDTVSFQRGvG 222
                         89***************************977778999*************************************************6657 PP

                         S.SEE..EEEEE-S CS
                  B3  87 r.sefelvvkvfrk 99 
                         +  + +l++ ++r+
  Gorai.007G114200.1 223 EsGKHRLYIDWRRR 236
                         77888899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.7E-42126244IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-30129236IPR015300DNA-binding pseudobarrel domain
CDDcd100172.09E-27130231No hitNo description
PfamPF023621.0E-29132236IPR003340B3 DNA binding domain
PROSITE profilePS5086315.03132237IPR003340B3 DNA binding domain
SMARTSM010191.6E-24132237IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MNTSKKPLFA EGNFWWWWVI LMNFVQDEDH EENDDEVTRE NTSNFPFSSS SSSATSNNKD  60
TVAQQHQKHL WLGTLDSRED YKVQVPAIKF DKKLGQMDLS LGNNNEYQSN IGSCIGGDSG  120
STIRCIEKEH MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL HSSTNEKGLL LNFEDRNGKS  180
WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD AGDTVSFQRG VGESGKHRLY IDWRRRPNAP  240
DPTTLAHIQL QSQFNFPHSV RWGSLYSMPQ PMCVPRNYEP LHRLNYSIYP NTHRQRQAIT  300
YGNAGQYYPR SSSGSHHHQI GAVQAGGAEP MVIDSVPVVQ GNKTVAKRLR LFGVNLECPN  360
TTQAESSSGF PHGTIGSDDS PHFSSFSRQS TLSNNNTLRQ SGMQAEYSKK GKSSLSIDLD  420
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-641272393116B3 domain-containing transcription factor NGA1
5os9_B4e-641272393116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490204.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
SwissprotQ6EU302e-79Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
SwissprotQ9MAN11e-79NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLA0A0D2TDC00.0A0A0D2TDC0_GOSRA; Uncharacterized protein
STRINGGorai.007G114200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.16e-82B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]