PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G113900.3 | ||||||||
Common Name | B456_007G113900, LOC105802855 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 730aa MW: 80167 Da PI: 6.6253 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.4e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Gorai.007G113900.3 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.91E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.091 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 7.9E-17 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.3E-13 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.38E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 730 aa Download sequence Send to blast |
MDAYSSGEEL LIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEALTKG IPTGQALDIE IPPPRPKRKP RNPYPRKMSA ATSVQMGAKD 120 GKSETPVSSL HCKQAFNLEK EPLPERSSRD EKSSNLKEIL DDNCSEVFTL LHEANCSSMS 180 SVNKNFIPTS TVLRNSCPLR EFVPSVKETI NKDTSKPSNL ENSCTSYEKP AQVQRKDDMD 240 GAICTDEMQA THNNPQHVAV HVLDGSPGTC APNPSMDITF QDSIFHPMGD IHGQVNLFAN 300 PAASATTAHQ NNAPRSTHQA FPTFHTPFMH LQPNQEDYRS FLHVSSAFSS LVVSTLLQNP 360 AAHAAASFAA TFWPYANVQN SDDSPACDQE GFPSRQMNSA TGMAAIAAAT AWWAAHGLLS 420 VCAPLQTGCT CAPASTATVT PMENGEAPAA KMERKMYAGQ DPSMQDQRLD PQYAEAMQCQ 480 RSASKSPTSS SDREESGEAK ANTEVKATAV TEPQDPNKTK NGKQVDRSSC GSNTPSSSDV 540 EMDVLEKNKE DKEQKEDSKA ADANHPQVEC SNRRGRSSTN LSDSWKEVSE GGRLAFQALF 600 SREVLPQSFS PPHDRENTEK QKGSVGADEQ NPDQNNGETS VLHFSSEACR SCSDNQGVEK 660 KALSKAKNIV DESLLTIGLG HEKLKARQTG FKPYKRCSVE AKESRVMNTG SQGEEKDPKR 720 IRLEGEALT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 100 | RPKRKPR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00654 | PBM | Transfer from LOC_Os08g06110 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012490194.1 | 0.0 | PREDICTED: protein LHY-like isoform X1 | ||||
TrEMBL | A0A0D2QQW9 | 0.0 | A0A0D2QQW9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G113900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.3 | 1e-131 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G113900.3 |
Entrez Gene | 105802855 |
Publications ? help Back to Top | |||
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