PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G113300.4

Common Name

B456_007G113300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 372aa MW: 42234 Da PI: 6.4514

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G113300.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.7	4.8e-14	200	251	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Gorai.007G113300.4 200 QRMTHIAVERNRRRQMNDYLNSLRSLMPPC---YIQRGDQASIIAGAIDFVKELE 251 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.45E-13	198	255	No hit	No description
SuperFamily	SSF47459	6.8E-17	199	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.126	199	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.7E-15	200	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-11	200	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-11	205	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MERLQGPINP YFLGEHLEVE CLEQGFISCE RLKLGEEEEE EAHFSIPSFE EKMPFLQMLQ 60 SVESPQLFAF KEPNFQTLLR LQHMKKPWEL NTNPFIPEME TQVQALELES CVTHETVLDL 120 HSPVKSETKE LKKSPPSSSC AEVLSSGSNQ HQPKSDNCSG EPNLGSSPQK IFTKSPPITR 180 ERRKRKRTKA AKNKEEVESQ RMTHIAVERN RRRQMNDYLN SLRSLMPPCY IQRGDQASII 240 AGAIDFVKEL EQLLQSLEAQ KRTGKVHESN NSMSNPAMEI HQQEYENGSE DGHCGEEVKA 300 ESKTGAAEVE VNVIHNHVNL KIQCSRRAGQ LIQAIVTLET LRLTVLHLNI TTSRASVLYS 360 FNLKVILFVL F*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MERLQGPINP YFLGEHLEVE CLEQGFISCE RLKLGEEEEE EAHFSIPSFE EKMPFLQMLQ  60
SVESPQLFAF KEPNFQTLLR LQHMKKPWEL NTNPFIPEME TQVQALELES CVTHETVLDL  120
HSPVKSETKE LKKSPPSSSC AEVLSSGSNQ HQPKSDNCSG EPNLGSSPQK IFTKSPPITR  180
ERRKRKRTKA AKNKEEVESQ RMTHIAVERN RRRQMNDYLN SLRSLMPPCY IQRGDQASII  240
AGAIDFVKEL EQLLQSLEAQ KRTGKVHESN NSMSNPAMEI HQQEYENGSE DGHCGEEVKA  300
ESKTGAAEVE VNVIHNHVNL KIQCSRRAGQ LIQAIVTLET LRLTVLHLNI TTSRASVLYS  360
FNLKVILFVL F*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	186	RRKRKR
2	200	211	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012490188.1	0.0	PREDICTED: transcription factor bHLH67-like isoform X1
TrEMBL	A0A0D2QQV6	0.0	A0A0D2QQV6_GOSRA; Uncharacterized protein
STRING	Gorai.007G113300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61950.1	4e-54	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G113300.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]